Pre_GI: BLASTP Hits

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Query: NC_009800:2889928:2897021 Escherichia coli HS, complete genome

Start: 2897021, End: 2897620, Length: 600

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012759:2757826:276362227636222764221600Escherichia coli BW2952 chromosome, complete genomehypothetical protein1e-112405
NC_000913:2873443:287781028778102878409600Escherichia coli K12, complete genomehypothetical protein1e-112405
NC_010473:2963951:297035229703522970951600Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein1e-112405
AC_000091:2872000:287844428784442879043600Escherichia coli W3110 DNA, complete genomehypothetical protein1e-112405
NC_010468:1029471:104301210430121043611600Escherichia coli ATCC 8739, complete genomeCRISPR-associated protein, Cse3 family2e-112404
NC_002939:1505701:151871115187111519319609Geobacter sulfurreducens PCA, complete genomeCRISPR-associated CT1974 family protein5e-39160
NC_013851:759500:764003764003764632630Allochromatium vinosum DSM 180 chromosome, complete genomeCRISPR-associated protein, Cse3 family1e-32139
NC_015676:1663700:167048916704891671172684Methanosalsum zhilinae DSM 4017 chromosome, complete genomeCRISPR-associated protein, Cse3 family7e-1890.5
NC_007775:723925:734975734975735607633Synechococcus sp. JA-3-3Ab, complete genomeCRISPR-associated protein, Cse3 family4e-1787.8
NC_007356:1165760:120409112040911204720630Dehalococcoides sp. CBDB1, complete genomeputative CRISPR-associated protein4e-1581.3
NC_013890:1175931:117994111799411180570630Dehalococcoides sp. GT chromosome, complete genomeCRISPR-associated protein, Cse3 family4e-1581.3
NC_013850:985331:996967996967997671705Klebsiella variicola At-22 chromosome, complete genomeCRISPR-associated protein, Cse3 family2e-1375.5
NC_015951:107360:108626108626109270645Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, completeCRISPR-associated protein, Cse3 family4e-1374.3
NC_014355:1461355:147334514733451474043699Candidatus Nitrospira defluvii, complete genomeCRISPR-associated protein Cse31e-1169.7
NC_006361:4574536:458588845858884586562675Nocardia farcinica IFM 10152, complete genomehypothetical protein3e-1168.6
NC_011894:5468500:549560154956015496332732Methylobacterium nodulans ORS 2060, complete genomeCRISPR-associated protein, Cse3 family4e-1168.2
NC_015434:2527412:252741225274122528089678Verrucosispora maris AB-18-032 chromosome, complete genomeCRISPR-associated Cse3 family protein4e-1064.7
NC_015170:54000:665796657967226648Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequenceCRISPR-associated protein, Cse3 family1e-0963.2
NC_014318:6395392:644492564449256445575651Amycolatopsis mediterranei U32 chromosome, complete genomeCRISPR-associated CSE3 family protein1e-0962.8
NC_017186:6395435:644496964449696445619651Amycolatopsis mediterranei S699 chromosome, complete genomeCRISPR-associated CSE3 family protein1e-0962.8
NC_007643:185135:201233201233201895663Rhodospirillum rubrum ATCC 11170, complete genomeCRISPR-associated CT1974 family protein4e-0961.6
NC_019673:1988853:203734320373432038008666Saccharothrix espanaensis DSM 44229 complete genomeCRISPR-associated Cse3 family protein1e-0859.7
NC_008526:343445:354352354352354999648Lactobacillus casei ATCC 334, complete genomeCRISPR-associated protein1e-0859.3
NC_018720:1812000:181560918156091816298690Bifidobacterium asteroides PRL2011 chromosome, complete genomeCRISPR-associated protein, Cse3 family2e-0858.9
NC_013159:1422370:143498714349871435580594Saccharomonospora viridis DSM 43017, complete genomeCRISPR-associated protein, Cse3 family5e-0857.8