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Query: NC_009800:2083465:2104831 Escherichia coli HS, complete genome

Start: 2104831, End: 2104995, Length: 165

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008253:2056734:207359420735942073758165Escherichia coli 536, complete genomehypothetical protein4e-23106
NC_004431:2304280:232111723211172321281165Escherichia coli CFT073, complete genomehypothetical protein4e-23106
NC_011745:2209288:227327022732702273434165Escherichia coli ED1a chromosome, complete genomehypothetical protein4e-23106
NC_011750:1094000:111483611148361115000165Escherichia coli IAI39 chromosome, complete genomehypothetical protein4e-23106
CP002797:2062006:206721920672192067383165Escherichia coli NA114, complete genomehypothetical protein4e-23106
NC_007946:2155454:217228221722822172446165Escherichia coli UTI89, complete genomehypothetical protein4e-23106