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Query: NC_009800:2083465:2104500 Escherichia coli HS, complete genome

Start: 2104500, End: 2104640, Length: 141

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:2201388:224401422440142244451438Shigella sonnei 53G, complete genomehypothetical protein2e-1684.3
NC_011601:2139188:218093321809332181430498Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein9e-1682
CP002797:2062006:206690620669062067028123Escherichia coli NA114, complete genomehypothetical protein2e-1581.3
NC_004431:2304280:232080423208042320926123Escherichia coli CFT073, complete genomehypothetical protein2e-1581.3
NC_007946:2155454:217196921719692172091123Escherichia coli UTI89, complete genomehypothetical protein2e-1581.3
NC_011745:2209288:227295722729572273079123Escherichia coli ED1a chromosome, complete genome1e-1478.6