Pre_GI: BLASTP Hits

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Query: NC_009800:2083465:2100993 Escherichia coli HS, complete genome

Start: 2100993, End: 2101925, Length: 933

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008253:2056734:206975620697562070691936Escherichia coli 536, complete genomeprotein ErfK/SrfK precursor3e-180630
NC_004431:2304280:231727923172792318214936Escherichia coli CFT073, complete genomeProtein erfK/srfK precursor3e-180630
NC_007946:2155454:216844421684442169379936Escherichia coli UTI89, complete genomehypothetical protein3e-180630
CP002797:2062006:206338120633812064313933Escherichia coli NA114, complete genomehypothetical protein3e-180630
NC_016822:2201388:224050722405072241439933Shigella sonnei 53G, complete genomeL,D-transpeptidase2e-179628
NC_011601:2139188:217742621774262178358933Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein5e-179626
NC_012947:1769438:177133417713341772269936Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein1e-178625
AC_000091:2027648:206452820645282065460933Escherichia coli W3110 DNA, complete genomeconserved hypothetical protein with NAD(P)-binding Rossmann-fold domain1e-178625
NC_000913:2042935:206041520604152061347933Escherichia coli K12, complete genomeconserved protein with NAD(P)-binding Rossmann-fold domain1e-178625
NC_010473:2119480:215142321514232152355933Escherichia coli str. K-12 substr. DH10B, complete genomeconserved protein with NAD(P)-binding Rossmann-fold domain1e-178625
NC_011745:2209288:226943222694322270364933Escherichia coli ED1a chromosome, complete genomehypothetical protein1e-178625
NC_012759:1920955:195289819528981953830933Escherichia coli BW2952 chromosome, complete genomehypothetical protein1e-178625
NC_012967:1967675:200039120003912001323933Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein1e-178625
NC_013353:2455052:245747824574782458410933Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-178624
AP010958:2455052:245747824574782458410933Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved hypothetical protein ErfK2e-178624
NC_010468:1816359:181880018188001819723924Escherichia coli ATCC 8739, complete genomeErfK/YbiS/YcfS/YnhG family protein6e-173606
NC_016612:5296076:531862453186245319565942Klebsiella oxytoca KCTC 1686 chromosome, complete genomeL,D-transpeptidase4e-152537
NC_015663:4906652:492354349235434924484942Enterobacter aerogenes KCTC 2190 chromosome, complete genomeL,D-transpeptidase1e-148526
NC_021066:601029:605224605224606165942Raoultella ornithinolytica B6, complete genomeL,D-transpeptidase1e-147522
NC_011283:1811000:188336118833611884296936Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein5e-144510
NC_011094:2061000:207582520758252076754930Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein8e-143506
NC_011149:2040396:205413720541372055066930Salmonella enterica subsp. enterica serovar Agona str. SL483,protein ErfK/srfK2e-142504
NC_016832:948029:949926949926950855930Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,L,D-transpeptidase ErfK/SrfK8e-142503
NC_004631:948054:949972949972950901930Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein8e-142503
NC_013353:922937:929353929353930273921Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein5e-109394
AP010958:922937:929353929353930273921Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein5e-109394
NC_013364:928486:934902934902935822921Escherichia coli O111:H- str. 11128, complete genomehypothetical protein1e-108392
NC_007712:1712667:1730410173041017315371128Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein3e-106385
NC_009348:3819271:383658138365813837507927Aeromonas salmonicida subsp. salmonicida A449, complete genomepeptidoglycan-binding LysM2e-99362
NC_008570:4009762:4024593402459340256271035Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeLysM domain protein5e-99360
NC_013421:2972269:3005361300536130063831023Pectobacterium wasabiae WPP163, complete genomeErfK/YbiS/YcfS/YnhG family protein9e-88323
NC_012917:2786283:2804764280476428057861023Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeErfK/YbiS/YcfS/YnhG family protein9e-88323
NC_009348:1347500:135138913513891352306918Aeromonas salmonicida subsp. salmonicida A449, complete genomehypothetical protein1e-76286
NC_020063:2077233:208972220897222090687966Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein4e-68258
NC_007484:755058:775264775264776262999Nitrosococcus oceani ATCC 19707, complete genomehypothetical protein3e-50198
NC_011901:1860887:1859616185961618608901275Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completehypothetical protein2e-43176
NC_012918:4648220:4661097466109746623261230Geobacter sp. M21 chromosome, complete genomeErfK/YbiS/YcfS/YnhG family protein2e-41169
NC_002971:1523065:152555015255501526494945Coxiella burnetii RSA 493, complete genomeLysM domain protein7e-41167
NC_011146:4505821:4525715452571545269441230Geobacter bemidjiensis Bem, complete genomeErfK/YbiS/YcfS/YnhG family protein3e-39162
NC_009483:2489000:2517302251730225186211320Geobacter uraniireducens Rf4 chromosome, complete genomeErfK/YbiS/YcfS/YnhG family protein1e-38160
NC_016002:1938749:196025419602541961246993Pseudogulbenkiania sp. NH8B, complete genomeYkuD family protein2e-31136
NC_011894:200928:204335204335205126792Methylobacterium nodulans ORS 2060, complete genomeErfK/YbiS/YcfS/YnhG family protein1e-1687.4
NC_012808:1220378:126495612649561265777822Methylobacterium extorquens AM1, complete genomehypothetical protein1e-1584.3
NC_012988:670101:689280689280690128849Methylobacterium extorquens DM4, complete genomehypothetical protein6e-1581.6
NC_012988:4353000:437534843753484376079732Methylobacterium extorquens DM4, complete genomehypothetical protein5e-1478.6
NC_010505:5077162:508577750857775086580804Methylobacterium radiotolerans JCM 2831, complete genomeErfK/YbiS/YcfS/YnhG family protein6e-1375.1
NC_012811:1105395:112850911285091129255747Methylobacterium extorquens AM1 megaplasmid, complete sequencehypothetical protein2e-1273.6
NC_014923:1249267:126104712610471261634588Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete7e-1271.6
NC_013791:2839516:284500328450032845497495Bacillus pseudofirmus OF4 chromosome, complete genomeUncharacterized erfK/srfK family protein, probably secreted2e-1170.1
NC_015589:2878000:289307328930732893954882Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeErfK/YbiS/YcfS/YnhG family protein3e-1169.3
NC_015565:2027279:207794920779492078833885Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeErfK/YbiS/YcfS/YnhG family protein7e-0961.6
NC_019896:2579036:259286725928672593370504Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeSpore protein YkuD1e-0861.2
NC_015675:1721543:1721543172154317230601518Mesorhizobium opportunistum WSM2075 chromosome, complete genomeErfK/YbiS/YcfS/YnhG family protein1e-0860.8
NC_002678:2739829:2764101276410127656181518Mesorhizobium loti MAFF303099, complete genomehypothetical protein3e-0859.3
NC_008254:3246306:3260010326001032614821473Mesorhizobium sp. BNC1, complete genomeErfK/YbiS/YcfS/YnhG6e-0858.5
NC_000964:1474451:147581914758191476313495Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein5e-0858.5
NC_008609:2787274:278921827892182789796579Pelobacter propionicus DSM 2379, complete genomeErfK/YbiS/YcfS/YnhG family protein1e-0757.8
NC_013411:284461:317145317145317651507Geobacillus sp. Y412MC61, complete genomeErfK/YbiS/YcfS/YnhG family protein1e-0757.4
NC_014923:1680095:1680095168009516816001506Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeErfK/YbiS/YcfS/YnhG family protein3e-0756.2
NC_020210:3341976:334737533473753347872498Geobacillus sp. GHH01, complete genomeputative L,D-transpeptidase Ldt4e-0755.8
NC_015857:1809500:1828886182888618303191434Brucella pinnipedialis B2/94 chromosome chromosome 1, completeErfK/YbiS/YcfS/YnhG family protein5e-0755.5
NC_003317:190975:194810194810195670861Brucella melitensis 16M chromosome I, complete sequencePROTEIN ERFK/SRFK7e-0755.1
NC_019973:1731626:1731626173162617331971572Mesorhizobium australicum WSM2073, complete genomehypothetical protein6e-0755.1
NC_010103:1777000:1796300179630017975261227Brucella canis ATCC 23365 chromosome I, complete sequenceATP synthase subunits region ORF 56e-0755.1
NC_004310:1777721:1798125179812517993511227Brucella suis 1330 chromosome I, complete sequencehypothetical protein6e-0755.1
NC_006510:3321426:332186033218603322357498Geobacillus kaustophilus HTA426, complete genomehypothetical protein9e-0754.7
NC_007618:1792500:1812111181211118133371227Brucella melitensis biovar Abortus 2308 chromosome I, completeErfK/YbiS/YcfS/YnhG9e-0754.7
NC_006932:1795500:1814983181498318162091227Brucella abortus biovar 1 str. 9-941 chromosome I, completehypothetical protein9e-0754.7
NC_010742:1794000:1813271181327118147041434Brucella abortus S19 chromosome 1, complete sequenceErfK/YbiS/YcfS/YnhG8e-0754.7
NC_009667:1076718:1079542107954210810081467Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequenceErfK/YbiS/YcfS/YnhG family protein1e-0654.3
NC_008319:1574908:157605115760511576644594Synechococcus sp. CC9311, complete genomeATP synthase1e-0653.9
NC_010169:1599936:1614082161408216153081227Brucella suis ATCC 23445 chromosome I, complete sequenceATP synthase subunits region ORF 52e-0653.5
NC_012793:3243727:325708732570873257584498Geobacillus sp. WCH70, complete genomeErfK/YbiS/YcfS/YnhG family protein2e-0653.1