Pre_GI: BLASTP Hits

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Query: NC_009800:2083465:2096806 Escherichia coli HS, complete genome

Start: 2096806, End: 2098446, Length: 1641

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012967:1967675:1996203199620319978461644Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein0964
NC_012759:1920955:1948710194871019503531644Escherichia coli BW2952 chromosome, complete genomehypothetical protein0964
AC_000091:2027648:2060340206034020619831644Escherichia coli W3110 DNA, complete genomepredicted multidrug efflux system0964
NC_010473:2119480:2147235214723521488781644Escherichia coli str. K-12 substr. DH10B, complete genomepredicted multidrug efflux system0964
NC_000913:2042935:2056227205622720578701644Escherichia coli K12, complete genomepredicted multidrug efflux system0964
NC_016822:2201388:2233186223318622348261641Shigella sonnei 53G, complete genomeMATE family multidrug exporter0962
NC_011745:2209288:2235917223591722375601644Escherichia coli ED1a chromosome, complete genomehypothetical protein0960
NC_011601:2139188:2173238217323821748781641Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein0957
NC_012947:1769438:1774970177497017764571488Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein0853
NC_010468:1816359:1848651184865118501381488Escherichia coli ATCC 8739, complete genomeMATE efflux family protein0845
NC_010067:892729:8927298927298941591431Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein0711
NC_011205:2180598:2224801222480122263271527Salmonella enterica subsp. enterica serovar Dublin str. CT_020218530674
NC_016832:948029:9512479512479527731527Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,MATE efflux0674
NC_011094:2061000:2064750206475020662761527Salmonella enterica subsp. enterica serovar Schwarzengrund strmate efflux family protein0673
NC_009436:2776410:2778429277842927798711443Enterobacter sp. 638, complete genomehypothetical protein0671
NC_011294:2053991:2097788209778820992451458Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein0671
NC_004631:948054:9513629513629528191458Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative inner membrane protein0670
NC_011274:2044000:2088921208892120903781458Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein0669
NC_014618:1809369:1828855182885518302791425Enterobacter cloacae SCF1 chromosome, complete genomeMATE efflux family protein0665
NC_016612:5231065:5250298525029852517551458Klebsiella oxytoca KCTC 1686 chromosome, complete genomeMATE family multidrug exporter0665
NC_013850:1753716:1776480177648017779491470Klebsiella variicola At-22 chromosome, complete genomeMATE efflux family protein0662
NC_020181:527592:5683845683845698231440Enterobacter aerogenes EA1509E, complete genomePutative inner membrane protein0650
NC_013592:1668092:1689904168990416913401437Dickeya dadantii Ech586, complete genomeMATE efflux family protein7e-144511
NC_012917:1840172:1843503184350318449331431Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeMATE efflux family protein8e-142504
NC_013421:3117639:3131759313175931331831425Pectobacterium wasabiae WPP163, complete genomeMATE efflux family protein3e-141502
NC_012880:1765920:1786595178659517881031509Dickeya dadantii Ech703, complete genomeMATE efflux family protein4e-139495
NC_017179:4023139:4023139402313940244971359Clostridium difficile BI1, complete genomemultidrug resistance protein1e-50201
NC_013315:4015119:4015119401511940164771359Clostridium difficile CD196 chromosome, complete genomemultidrug resistance protein1e-50201
NC_013316:4095905:4095905409590540972631359Clostridium difficile R20291, complete genomeputative multidrug resistance protein1e-50201
NC_012778:1778654:1800244180024418015931350Eubacterium eligens ATCC 27750, complete genomemultidrug resistance protein, MATE family8e-27122
NC_009922:944538:9660059660059674081404Alkaliphilus oremlandii OhILAs, complete genomeMATE efflux family protein1e-26121
NC_015578:3561838:3578415357841535797581344Treponema primitia ZAS-2 chromosome, complete genomeMATE efflux family protein3e-25117
NC_015474:328500:3403903403903417811392Pyrococcus sp. NA2 chromosome, complete genomeDNA damage-inducible protein1e-1998.6
NC_019978:922978:9229789229789243481371Halobacteroides halobius DSM 5150, complete genomeputative efflux protein, MATE family1e-1688.6
NC_012471:51305:6667366673679831311Streptococcus equi subsp. equi 4047, complete genomemulti antimicrobial extrusion (MATE) family transporter3e-1687
NC_012438:1564794:1578334157833415796591326Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomesodium-driven multidrug efflux pump protein1e-1585.5
NC_012914:469117:4957944957944971881395Paenibacillus sp. JDR-2, complete genomeMATE efflux family protein4e-1583.6
NC_009443:277246:2772462772462785291284Streptococcus suis 98HAH33, complete genomeNa+-driven multidrug efflux pump7e-1582.8
NC_009442:277392:2773922773922786751284Streptococcus suis 05ZYH33 chromosome, complete genomeNa+-driven multidrug efflux pump7e-1582.8
NC_014019:2661000:2671475267147526729021428Bacillus megaterium QM B1551 chromosome, complete genomeMATE efflux family protein8e-1582.4
NC_012925:275704:2777602777602790371278Streptococcus suis P1/7, complete genomemulti antimicrobial extrusion (MATE) family transporter8e-1582.4
NC_012924:277325:2773252773252786021278Streptococcus suis SC84, complete genomemulti antimicrobial extrusion (MATE) family transporter8e-1582.4
NC_014103:2635695:2650881265088126522751395Bacillus megaterium DSM319 chromosome, complete genomeMATE efflux family protein1e-1482
NC_015433:285581:2882272882272895041278Streptococcus suis ST3 chromosome, complete genomeMATE efflux family protein2e-1481.3
NC_016631:2112175:2113886211388621153041419Granulicella mallensis MP5ACTX8 chromosome, complete genomeMATE efflux family protein8e-1479
NC_012440:1080675:1096173109617310974771305Persephonella marina EX-H1, complete genomesodium-driven multidrug efflux pump protein9e-1375.5
NC_014387:1106901:1121574112157411229321359Butyrivibrio proteoclasticus B316 chromosome 1, complete genomeMatE efflux family protein7e-1169.3
NC_016935:976059:9784369784369798271392Paenibacillus mucilaginosus 3016 chromosome, complete genomeMATE efflux family protein7e-1169.3
NC_011134:51218:676716767168417747Streptococcus equi subsp. zooepidemicus str. MGCS10565, completemulti antimicrobial extrusion (MATE) family transporter1e-1068.6
NC_011899:1969187:1973825197382519751531329Halothermothrix orenii H 168, complete genomeMATE efflux family protein2e-1067.8
NC_016776:2549465:2557338255733825587711434Bacteroides fragilis 638R, complete genomeputative cation efflux protein3e-1067
NC_017095:1461520:1477155147715514785011347Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeputative efflux protein, MATE family6e-1066.2
NC_020063:2785652:2789029278902927903691341Enterobacteriaceae bacterium strain FGI 57, complete genomeputative efflux protein, MATE family2e-0964.7
NC_013192:63111:8642786427877461320Leptotrichia buccalis DSM 1135, complete genomeMATE efflux family protein2e-0964.7
NC_003228:2473956:2482540248254024839731434Bacteroides fragilis NCTC 9343, complete genomeputative cation efflux protein2e-0964.3
NC_015671:3470903:3492303349230334936611359Cellvibrio gilvus ATCC 13127 chromosome, complete genomeMATE efflux family protein3e-0963.9
NC_009785:130252:1463971463971476741278Streptococcus gordonii str. Challis substr. CH1, complete genomeMulti antimicrobial extrusion family transporter, putative3e-0963.9
NC_013656:2382000:2396307239630723975091203Lactococcus lactis subsp. lactis KF147, complete genomeNa+ driven multidrug efflux pump8e-0962.4
NC_013192:815854:8355898355898369621374Leptotrichia buccalis DSM 1135, complete genomeMATE efflux family protein1e-0862
NC_019897:3467618:3468591346859134699671377Thermobacillus composti KWC4 chromosome, complete genomeefflux protein, MATE family1e-0862
NC_002973:1877905:1901813190181319031831371Listeria monocytogenes str. 4b F2365, complete genomemultidrug efflux protein NorA2e-0861.6
NC_014500:3097362:3104536310453631059151380Dickeya dadantii 3937 chromosome, complete genomeNa+ driven multidrug efflux pump2e-0860.8
NC_013768:1983711:2007604200760420089951392Listeria monocytogenes 08-5923, complete genomemultidrug efflux protein3e-0860.8
NC_008555:1874878:1896395189639518977651371Listeria welshimeri serovar 6b str. SLCC5334, complete genomeMATE efflux family protein4e-0860.1
NC_012029:1525929:1548376154837615500401665Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete genomeMATE efflux family protein2e-0757.8
NC_006177:835459:8532008532008544501251Symbiobacterium thermophilum IAM 14863, complete genomeNa+-driven multidrug efflux protein3e-0757.4
NC_016935:7426389:7446133744613374475031371Paenibacillus mucilaginosus 3016 chromosome, complete genomeMATE efflux family protein3e-0757.4
NC_015690:7334786:7354044735404473554141371Paenibacillus mucilaginosus KNP414 chromosome, complete genomeMATE efflux family protein2e-0757.4
NC_008699:4922465:4937851493785149392301380Nocardioides sp. JS614, complete genomeMATE efflux family protein6e-0756.2
NC_007498:2618131:2623969262396926253631395Pelobacter carbinolicus DSM 2380, complete genomeNa+-driven multidrug efflux pump7e-0755.8
NC_021177:4041915:4063122406312240644591338Streptomyces fulvissimus DSM 40593, complete genomeDNA-damage-inducible protein F1e-0655.5
NC_012658:99899:99899998991012361338Clostridium botulinum Ba4 str. 657 chromosome, complete genomeMATE efflux family protein1e-0655.5
NC_015977:255029:2698972698972710481152Roseburia hominis A2-183 chromosome, complete genomeMATE efflux family protein1e-0655.1
NC_013891:1861294:1880643188064318820131371Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomemultidrug resistance protein, putative2e-0654.7
NC_015416:2292555:2311041231104123124351395Methanosaeta concilii GP-6 chromosome, complete genomeMATE efflux family protein2e-0654.3
NC_003454:128000:1477421477421490791338Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeNa+ driven multidrug efflux pump3e-0653.9
NC_015977:2807782:2811790281179028132171428Roseburia hominis A2-183 chromosome, complete genomeMATE family multidrug resistance protein4e-0653.5
NC_014732:141000:1419871419871434591473Halogeometricum borinquense DSM 11551 plasmid pHBOR04, completeefflux protein, MATE family5e-0653.1
NC_015737:53682:5679356793582141422Clostridium sp. SY8519, complete genomehypothetical protein6e-0653.1
NC_015519:197836:2352942352942366761383Tepidanaerobacter sp. Re1 chromosome, complete genomeMATE efflux family protein9e-0652.4