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Query: NC_009800:2083465:2090879 Escherichia coli HS, complete genome

Start: 2090879, End: 2091931, Length: 1053

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:2201388:2228850222885022299021053Shigella sonnei 53G, complete genomeglycosyl transferase family protein0719
CP002185:2181936:2203686220368622047381053Escherichia coli W, complete genome0702
NC_010468:1816359:1855013185501318560651053Escherichia coli ATCC 8739, complete genomeADP-heptose:LPS heptosyltransferase-like protein0701
NC_011601:2139188:2141521214152121425731053Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeADP-heptose: LPS heptosyltransferase0689
NC_011751:2327014:2351719235171923527711053Escherichia coli UMN026 chromosome, complete genomehypothetical protein0684
NC_011745:2209288:223033822303382231042705Escherichia coli ED1a chromosome, complete genome2e-136485
NC_000913:2042935:205064820506482051352705Escherichia coli K12, complete genome9e-136483
NC_011745:2209288:222999022299902230316327Escherichia coli ED1a chromosome, complete genome5e-57221
NC_000913:2042935:205030020503002050626327Escherichia coli K12, complete genome5e-57221
NC_003454:1889529:1903295190329519044341140Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeLOS biosynthesis enzyme LBGB7e-0858.5
NC_011027:1971580:1977317197731719783841068Chlorobaculum parvum NCIB 8327, complete genomeglycosyl transferase family 99e-0858.2