Pre_GI: BLASTP Hits

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Query: NC_009800:2049346:2072118 Escherichia coli HS, complete genome

Start: 2072118, End: 2072699, Length: 582

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011750:2928990:294209829420982942646549Escherichia coli IAI39 chromosome, complete genomeputative baseplate assembly phage protein2e-1685.5
NC_011742:2823000:284261128426112843159549Escherichia coli S88 chromosome, complete genomebaseplate assembly phage protein2e-1685.5
NC_008563:2909945:292530129253012925849549Escherichia coli APEC O1, complete genomebacteriophage V tail protein2e-1685.5
NC_007946:2894793:291027429102742910822549Escherichia coli UTI89, complete genomebacteriophage V tail protein2e-1685.5
NC_010102:1779707:180427918042791804812534Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein5e-1684.3
NC_011094:2115750:213167621316762132209534Salmonella enterica subsp. enterica serovar Schwarzengrund strbacteriophage Mu Gp45 protein5e-1684
NC_011205:2137696:215301821530182153551534Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853bacteriophage Mu Gp45 protein7e-1683.6
NC_016810:2027311:204599420459942046527534Salmonella enterica subsp. enterica serovar Typhimurium strputative bacteriophage baseplate protein7e-1683.6
NC_016856:2085283:209983120998312100364534Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative base plate assembly protein7e-1683.6
NC_016857:2027311:204599420459942046527534Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative base plate assembly protein7e-1683.6
NC_016863:2029340:204802320480232048556534Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein7e-1683.6
NC_017046:2026672:204535520453552045888534Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage baseplate protein7e-1683.6
NC_008258:269806:270885270885271433549Shigella flexneri 5 str. 8401, complete genometail protein1e-1583.2
NC_011740:621408:622487622487623035549Escherichia fergusonii ATCC 35469, complete genomeputative baseplate assembly phage protein9e-1683.2
NC_009436:2776410:279203427920342792576543Enterobacter sp. 638, complete genomephage baseplate assembly protein V3e-1581.3
NC_011294:2009388:202471120247112025244534Salmonella enterica subsp. enterica serovar Enteritidis strphage baseplate protein4e-1580.9
NC_007712:1182518:119662311966231197189567Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein2e-1272.4
NC_008014:112000:131586131586132182597Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequencehypothetical protein3e-0754.7
NC_002937:255790:256925256925257563639Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completephage baseplate assembly protein V, putative5e-0754.3
NC_014228:3282500:331026233102623310807546Xenorhabdus nematophila ATCC 19061, complete genomeputative baseplate assembly protein5e-0754.3
NC_002937:2933000:295332229533222953960639Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completephage baseplate assembly protein V, putative8e-0753.5
NC_002927:3827211:383902838390283839669642Bordetella bronchiseptica RB50, complete genomehypothetical protein1e-0652.8
NC_007712:1262593:126452012645201265215696Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein3e-0651.6
NC_007712:4023516:403477740347774035328552Sodalis glossinidius str. 'morsitans', complete genomephage assembly protein3e-0651.6