Pre_GI: BLASTP Hits

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Query: NC_009800:2049346:2063302 Escherichia coli HS, complete genome

Start: 2063302, End: 2063505, Length: 204

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016860:2323017:232650423265042327175672Salmonella enterica subsp. enterica serovar Typhimurium strDNA polymerase V subunit UmuD1e-1065.5
NC_010102:683444:714177714177714848672Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-1065.5
NC_011083:2375061:237854823785482379219672Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,DNA polymerase V subunit1e-1065.5
NC_014838:254322:262946262946263185240Pantoea sp. At-9b plasmid pPAT9B01, complete sequencehypothetical protein1e-0858.5
NC_016816:2925459:293812829381282938367240Pantoea ananatis LMG 5342, complete genomeDNA polymerase V subunit UmuD2e-0857.8