Pre_GI: BLASTP Hits

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Query: NC_009800:2049346:2054141 Escherichia coli HS, complete genome

Start: 2054141, End: 2054344, Length: 204

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011741:2091249:2095731209573120969481218Escherichia coli IAI1 chromosome, complete genomePorin OmpN3e-26117
CU928160:2091249:2095731209573120969481218Escherichia coli IAI1 chromosome, complete genomePorin OmpN3e-26117
NC_013941:2425233:2428383242838324295701188Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein3e-26117
NC_002695:2655445:265920726592072659782576Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein4e-26116
NC_011353:2563056:256681825668182567393576Escherichia coli O157:H7 str. EC4115 chromosome, complete genome4e-26116
NC_013008:2561586:256579925657992566374576Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeouter membrane protein4e-26116
NC_002655:2730659:273442127344212734996576Escherichia coli O157:H7 EDL933, complete genomeputative outer membrane protein4e-26116
NC_011205:1227373:124031812403181240716399Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853outer membrane protein N1e-25115
NC_011274:1129686:1153689115368911548851197Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91outer membrane protein S11e-25115
NC_016810:2027311:2035137203513720363331197Salmonella enterica subsp. enterica serovar Typhimurium strouter membrane protein S17e-26115
NC_016856:2085283:2088974208897420901701197Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative porin7e-26115
NC_016857:2027311:2035137203513720363331197Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative porin7e-26115
NC_016863:2029340:2037166203716620383621197Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative porin7e-26115
NC_017046:2026672:2034498203449820356941197Salmonella enterica subsp. enterica serovar Typhimurium str. 798outer membrane protein S17e-26115
NC_011149:1110642:1126504112650411277151212Salmonella enterica subsp. enterica serovar Agona str. SL483,outer membrane protein N7e-26115
NC_016832:948029:9818009818009829841185Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Outer membrane porin protein ompD2e-25114
NC_004631:948054:9841259841259853091185Salmonella enterica subsp. enterica serovar Typhi Ty2, completeouter membrane protein S12e-25114
NC_000913:2028472:203286320328632033267405Escherichia coli K12, complete genome3e-25114
NC_016831:1865681:1870280187028018714761197Salmonella enterica subsp. enterica serovar Gallinarum/pullorumouter membrane protein S15e-25112
NC_015761:1970042:1977884197788419790741191Salmonella bongori NCTC 12419, complete genomeouter membrane protein S12e-24110
NC_013716:2139952:2145537214553721467121176Citrobacter rodentium ICC168, complete genomeOuter membrane porin protein1e-23108
NC_013364:2522888:2526040252604025272031164Escherichia coli O111:H- str. 11128, complete genomeputative outer membrane pore protein7e-23105
NC_011415:2248417:2252020225202022531831164Escherichia coli SE11 chromosome, complete genomeputative porin7e-23105
NC_010498:1210145:1224155122415512253181164Escherichia coli SMS-3-5, complete genomeporin family protein7e-23105
NC_016822:2201388:221146522114652211830366Shigella sonnei 53G, complete genomeputative outer membrane pore protein2e-22104
NC_011283:1901229:1915691191569119168361146Klebsiella pneumoniae 342 chromosome, complete genomeporin2e-21101
NC_008563:1505405:1522248152224815233811134Escherichia coli APEC O1, complete genomeouter membrane pore protein N, non-specific3e-21100
NC_013361:1896446:1918777191877719199101134Escherichia coli O26:H11 str. 11368 chromosome, complete genomeouter membrane pore protein N3e-21100
NC_012947:2366000:2369930236993023710631134Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeporin Gram-negative type3e-21100
NC_016612:4119410:4119410411941041205161107Klebsiella oxytoca KCTC 1686 chromosome, complete genomeouter membrane pore protein N, non-specific6e-2199.4
NC_016514:2476359:2480816248081624819251110Enterobacter cloacae EcWSU1 chromosome, complete genomeouter membrane protein N8e-2199
NC_014121:1848971:1862509186250918636181110Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeouter membrane pore protein N, non-specific1e-2098.6
NC_013716:1756545:1760425176042517615581134Citrobacter rodentium ICC168, complete genomeouter membrane protein N (porin)1e-2098.2
NC_015663:4906652:4912147491214749132891143Enterobacter aerogenes KCTC 2190 chromosome, complete genomeouter membrane pore protein S14e-2096.7
NC_015062:58826:647326473265292561Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence9e-2095.5
NC_017060:59500:648716487165473603Rahnella aquatilis HX2 plasmid PRA1, complete sequenceouter membrane pore protein N, non-specific1e-1995.1
NC_020063:2449554:2453423245342324545921170Enterobacteriaceae bacterium strain FGI 57, complete genomeouter membrane protein (porin)1e-1994.7
NC_011294:2334979:2359510235951023606461137Salmonella enterica subsp. enterica serovar Enteritidis strouter membrane porin protein C5e-1786.3
NC_011274:2325840:235037923503792351347969Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91outer membrane protein C5e-1786.3
NC_011748:824367:8366178366178376991083Escherichia coli 55989, complete genomeouter membrane porin; DLP12 prophage8e-1785.5
CU928145:824367:8366178366178376991083Escherichia coli 55989 chromosome, complete genomeouter membrane porin; DLP12 prophage8e-1785.5
NC_011751:643976:6614176614176624991083Escherichia coli UMN026 chromosome, complete genomeputative outer membrane porin1e-1685.1
NC_008563:1175035:1193929119392911950711143Escherichia coli APEC O1, complete genomeouter membrane porin protein NmpC precursor1e-1685.1
NC_007946:1239278:1256542125654212576841143Escherichia coli UTI89, complete genomeouter membrane porin protein NmpC precursor1e-1685.1
NC_011742:1177946:1197451119745111985931143Escherichia coli S88 chromosome, complete genomeouter membrane porin1e-1685.1
NC_004431:1401681:1420007142000714211491143Escherichia coli CFT073, complete genomeOuter membrane porin protein nmpC precursor1e-1685.1
NC_013941:699286:7138747138747149561083Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeouter membrane porin protein C1e-1685.1
NC_015566:3659318:3676851367685136779691119Serratia sp. AS12 chromosome, complete genomeporin6e-1682.8
NC_011740:1991941:1996644199664419977471104Escherichia fergusonii ATCC 35469, complete genomeouter membrane porin; DLP12 prophage6e-1682.8
NC_011415:2153243:2153243215324321543251083Escherichia coli SE11 chromosome, complete genomeputative outer membrane porin protein2e-1581.3
NC_015061:2770856:2785809278580927869211113Rahnella sp. Y9602 chromosome, complete genomeporin Gram-negative type8e-1579
NC_013961:2370994:2399119239911924002251107Erwinia amylovora, complete genomeOuter membrane protein 1B precursor4e-1476.6
NC_013971:2408522:2436647243664724377531107Erwinia amylovora ATCC 49946 chromosome, complete genomeouter membrane protein C4e-1476.6
NC_020064:1409596:1409596140959614106931098Serratia marcescens FGI94, complete genomeouter membrane protein (porin)8e-1475.9
NC_014121:1101093:1103964110396411050161053Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeouter membrane phosphoporin protein E1e-1375.1
NC_016514:891772:8958698958698969211053Enterobacter cloacae EcWSU1 chromosome, complete genomeouter membrane pore protein E1e-1375.1
NC_004337:1783645:1792048179204817931481101Shigella flexneri 2a str. 301, complete genomeputative outer membrane porin protein2e-1374.7
NC_004741:1823000:1828994182899418300941101Shigella flexneri 2a str. 2457T, complete genomeputative outer membrane porin protein2e-1374.3
NC_017328:1835108:1844591184459118456911101Shigella flexneri 2002017 chromosome, complete genomeputative outer membrane porin protein2e-1374.3
NC_008258:1784637:1791372179137217924721101Shigella flexneri 5 str. 8401, complete genomeputative outer membrane porin protein2e-1374.3
NC_002695:2056545:2066351206635120674511101Escherichia coli O157:H7 str. Sakai, complete genomeputaive outer membrane porin protein3e-1373.9
NC_002655:2015000:2021022202102220221221101Escherichia coli O157:H7 EDL933, complete genomeputative outer membrane porin protein3e-1373.9
NC_011353:1971145:1980951198095119820511101Escherichia coli O157:H7 str. EC4115 chromosome, complete genomegram-negative porin family protein3e-1373.9
NC_013008:1971662:1979927197992719810271101Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeouter membrane porin protein3e-1373.9
NC_007384:1737885:1745537174553717466371101Shigella sonnei Ss046, complete genomeputative outer membrane porin protein3e-1373.9
NC_016822:1818897:1824859182485918259591101Shigella sonnei 53G, complete genomeouter membrane porin protein3e-1373.9
NC_010498:1700447:1705762170576217068621101Escherichia coli SMS-3-5, complete genomeporin family protein3e-1373.9
NC_011750:1809943:1822110182211018232101101Escherichia coli IAI39 chromosome, complete genomeouter membrane porin protein ompD3e-1373.9
NC_007606:1515403:152571215257121526020309Shigella dysenteriae Sd197, complete genomehypothetical protein3e-1373.9
NC_013941:1857724:1870815187081518719151101Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeGram-negative porin family3e-1373.6
NC_013282:923500:9260759260759271601086Cronobacter turicensis, complete genomeOuter membrane pore protein E5e-1373.2
NC_007946:289425:2912382912382922991062Escherichia coli UTI89, complete genomeouter membrane pore protein E precursor9e-1372.4
NC_008563:287136:2912172912172922781062Escherichia coli APEC O1, complete genomeouter membrane pore protein E precursor9e-1372.4
NC_004431:364000:3663973663973674581062Escherichia coli CFT073, complete genomeOuter membrane pore protein E precursor9e-1372.4
NC_011742:291237:2912372912372922921056Escherichia coli S88 chromosome, complete genomeouter membrane phosphoporin protein E8e-1372.4
NC_011745:291422:2931642931642942191056Escherichia coli ED1a chromosome, complete genomeouter membrane phosphoporin protein E8e-1372.4
NC_006905:368942:3689423689423699941053Salmonella enterica subsp. enterica serovar Choleraesuis strouter membrane pore protein e (e,ic,nmpab)8e-1372.4
NC_016856:365665:3656653656653667171053Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Souter membrane phosphoporin protein E8e-1372.4
NC_016860:364981:3649813649813660331053Salmonella enterica subsp. enterica serovar Typhimurium strouter membrane porin E8e-1372.4
NC_010498:301000:3028133028133038681056Escherichia coli SMS-3-5, complete genomeouter membrane pore protein E1e-1272
NC_013361:313540:3175503175503186051056Escherichia coli O26:H11 str. 11368 chromosome, complete genomeouter membrane phosphoporin protein E1e-1272
NC_007384:307013:3110233110233120781056Shigella sonnei Ss046, complete genomeouter membrane pore protein E (E,Ic,NmpAB)1e-1272
NC_013716:357928:3596823596823607341053Citrobacter rodentium ICC168, complete genomeouter membrane pore protein E1e-1272
NC_016832:2581145:2602679260267926037311053Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Outer membrane pore protein E4e-1270.1
NC_017328:303987:3057293057293067841056Shigella flexneri 2002017 chromosome, complete genomeOuter membrane pore protein E4e-1270.1
NC_020260:3004500:3019080301908030201501071Cronobacter sakazakii Sp291, complete genomeouter membrane phosphoporin protein E4e-1270.1
NC_014618:3700640:3715169371516937162661098Enterobacter cloacae SCF1 chromosome, complete genomeporin6e-1269.3
NC_020063:3690308:3744533374453337455971065Enterobacteriaceae bacterium strain FGI 57, complete genomeouter membrane protein (porin)1e-1168.6
NC_014121:2745097:2764515276451527655701056Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeOmpF porin2e-1167.8
NC_010473:498252:5130845130845153802297Escherichia coli str. K-12 substr. DH10B, complete genome3e-1167.4
NC_021066:3028421:3030950303095030320021053Raoultella ornithinolytica B6, complete genomeouter membrane phosphoporin protein E3e-1167
NC_012731:1088321:1105013110501311060651053Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeouter membrane phosphoporin protein E2e-1064.7
NC_011283:4438500:4441282444128244423341053Klebsiella pneumoniae 342 chromosome, complete genomeouter membrane phosphoporin protein E2e-1064.7
NC_009648:293052:3200013200013210291029Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeouter membrane phosphoporin protein E2e-1064.7
NC_020064:2779864:2792369279236927934481080Serratia marcescens FGI94, complete genomeouter membrane protein (porin)3e-1063.9
NC_008563:2041345:2041345204134520424901146Escherichia coli APEC O1, complete genomeOuter membrane protein N precursor3e-1063.9
CP002516:1902431:1919201191920119203161116Escherichia coli KO11, complete genomeporin Gram-negative type3e-1063.9
CP002185:2181936:2185539218553921866541116Escherichia coli W, complete genome3e-1063.9
NC_016902:1902431:1919201191920119203161116Escherichia coli KO11FL chromosome, complete genomeporin3e-1063.9
NC_010473:623810:6276016276016286401040Escherichia coli str. K-12 substr. DH10B, complete genome6e-1062.8
NC_000913:558920:5749815749815761081128Escherichia coli K12, complete genomeDLP12 prophage; truncated outer membrane porin (pseudogene)6e-1062.8
AC_000091:558920:5749815749815761081128Escherichia coli W3110 DNA, complete genome6e-1062.8
NC_016612:5208936:5214784521478452158541071Klebsiella oxytoca KCTC 1686 chromosome, complete genomeporin6e-1062.8
NC_014500:2934232:2942238294223829433411104Dickeya dadantii 3937 chromosome, complete genomeouter membrane porin 1a (Ia;b;F)9e-1062.4
NC_004431:2185750:2185750218575021868771128Escherichia coli CFT073, complete genomeOuter membrane protein N precursor1e-0962
NC_008253:1938975:1938975193897519400331059Escherichia coli 536, complete genomeputative outer membrane pore protein1e-0962
NC_011740:1991941:1995018199501819960731056Escherichia fergusonii ATCC 35469, complete genomeOuter membrane protein N precursor (porin)2e-0961.6
NC_004741:2009769:201304720130472013256210Shigella flexneri 2a str. 2457T, complete genomeputative outer membrane protein2e-0961.6
NC_008258:2045000:204503720450372045246210Shigella flexneri 5 str. 8401, complete genomeputative outer membrane protein2e-0961.6
NC_017328:2090679:209197120919712092180210Shigella flexneri 2002017 chromosome, complete genomeputative outer membrane protein2e-0961.6
NC_013353:2272919:2273321227332122743941074Escherichia coli O103:H2 str. 12009, complete genomeouter membrane porin protein2e-0960.8
NC_009801:2159123:2163636216363621647091074Escherichia coli E24377A, complete genomeouter membrane protein homolog2e-0960.8
AP010958:2272919:2273321227332122743941074Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted outer membrane porin protein2e-0960.8
NC_007613:1038000:105747910574791057976498Shigella boydii Sb227, complete genomeputative outer membrane porin protein C precurser4e-0960.1
NC_014500:2934232:2943874294387429449801107Dickeya dadantii 3937 chromosome, complete genomeouter membrane protein F2e-0754.3
NC_021066:601029:6145096145096155791071Raoultella ornithinolytica B6, complete genomeouter membrane protein F9e-0648.9