Pre_GI: BLASTP Hits

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Query: NC_009800:1254409:1277932 Escherichia coli HS, complete genome

Start: 1277932, End: 1278977, Length: 1046

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011751:1446073:147575914757591476670912Escherichia coli UMN026 chromosome, complete genomehemolysin E4e-89328
NC_013364:1477248:152432315243231525234912Escherichia coli O111:H- str. 11128, complete genomehemolysin E4e-89328
NC_013361:1634226:165651116565111657422912Escherichia coli O26:H11 str. 11368 chromosome, complete genomehemolysin E4e-89328
NC_012759:1093764:111742711174271118338912Escherichia coli BW2952 chromosome, complete genomehemolysin E4e-89328
NC_010473:1245284:126894712689471269858912Escherichia coli str. K-12 substr. DH10B, complete genomehemolysin E4e-89328
CP002185:1298675:132235213223521323261910Escherichia coli W, complete genome2e-34146