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Query: NC_009800:1254409:1271859 Escherichia coli HS, complete genome

Start: 1271859, End: 1271978, Length: 120

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010658:1193225:121100912110091211128120Shigella boydii CDC 3083-94, complete genomehypothetical protein2e-1580.9
NC_009801:1296488:131407413140741314193120Escherichia coli E24377A, complete genomehypothetical protein2e-1580.9
NC_013008:3525428:356393635639363564055120Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein9e-1268.9
NC_011353:3573641:360921136092113609330120Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein9e-1268.9
NC_010498:2847359:285631328563132856432120Escherichia coli SMS-3-5, complete genomehypothetical protein9e-1268.9