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Query: NC_009800:1254409:1271093 Escherichia coli HS, complete genome

Start: 1271093, End: 1271437, Length: 345

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013941:1460144:147490714749071475251345Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein5e-1579.7
NC_011601:1315746:132991213299121330256345Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein5e-1579.7
NC_011415:1273551:129037012903701290714345Escherichia coli SE11 chromosome, complete genomehypothetical protein5e-1579.7
NC_004431:1443968:146064014606401460984345Escherichia coli CFT073, complete genomehypothetical protein5e-1579.7
NC_010658:1193225:121024312102431210587345Shigella boydii CDC 3083-94, complete genomehypothetical protein5e-1579.7
NC_010498:1995500:199872119987211999065345Escherichia coli SMS-3-5, complete genomehypothetical protein5e-1579.7
NC_007946:1280508:129607512960751296419345Escherichia coli UTI89, complete genomehypothetical protein5e-1579.7
NC_009801:1296488:131330813133081313652345Escherichia coli E24377A, complete genomehypothetical protein5e-1579.7