Pre_GI: BLASTP Hits

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Query: NC_009727:670616:673477 Coxiella burnetii Dugway 7E9-12, complete genome

Start: 673477, End: 674664, Length: 1188

Host Lineage: Coxiella burnetii; Coxiella; Coxiellaceae; Legionellales; Proteobacteria; Bacteria

General Information: Coxiella burnetii Dugway 5J108-111 was isolated from rodents in Utah, USA. This organism is widely distributed in nature and can cause infections in reptiles, birds, and mammals. It causes Q fever, or 'query' fever, an atypical pneumonia first associated with abattoir workers in Australia. Transmission may be through insect vectors such as ticks that have bitten an infected wild or domesticated animal, or through an aerosol produced by domesticated animals such as sheep or cattle. The presence of a plasmid is believed to be associated with virulence and pathogenicity, however C. burnetii isolates containing plasmid QpDG are avirulent in guinea pigs and plasmidless isolates have been associated with endocarditis in humans. Coxiella burnetii has a developmental life cycle, and can grow vegetatively through binary fission, or asymmetrically and produce a spore-like cell. The spore-like cell may enable the organism to exist extracellularly for small amounts of time. This bacterium is an obligate intracellular pathogen. It is endocytosed by a host cell, a macrophage for example, and lives and replicates inside the phagolysozome, a unique property of this organism. The genome encodes proteins that have a higher than average pI, which may enable adaptation to the acidic environment of the phagolysozome. The chromosome also contains genes for a number of detoxification and stress response proteins such as dismutases that allow growth in the oxidative environment. The type IV system is similar to the one found in Legionella, which may be important for intracellular survival. This organism produces numerous ankyrin-repeat proteins that may be involved in interactions with the host cell. The genome has 83 pseudogenes, which may be a result of the typical genome-wide degradation observed with other intracellular organisms and also has a group I intron in the 23S ribosomal RNA gene.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002971:619355:6247286247286259901263Coxiella burnetii RSA 493, complete genomemethyltransferase, FkbM family0784
NC_010117:700112:7054857054857066721188Coxiella burnetii RSA 331, complete genomemethyltransferase, FkbM family0781
NC_011527:1255998:1284971128497112862841314Coxiella burnetii CbuG_Q212, complete genomehypothetical protein0776
NC_008312:3385930:3391278339127833927351458Trichodesmium erythraeum IMS101, complete genomemethyltransferase FkbM family4e-1065.9
NC_011884:732000:744734744734745693960Cyanothece sp. PCC 7425, complete genomemethyltransferase FkbM family2e-0860.1
NC_002944:1285436:129571912957191296441723Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein6e-0652.4