Pre_GI: BLASTP Hits

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Query: NC_009727:357206:371357 Coxiella burnetii Dugway 7E9-12, complete genome

Start: 371357, End: 372385, Length: 1029

Host Lineage: Coxiella burnetii; Coxiella; Coxiellaceae; Legionellales; Proteobacteria; Bacteria

General Information: Coxiella burnetii Dugway 5J108-111 was isolated from rodents in Utah, USA. This organism is widely distributed in nature and can cause infections in reptiles, birds, and mammals. It causes Q fever, or 'query' fever, an atypical pneumonia first associated with abattoir workers in Australia. Transmission may be through insect vectors such as ticks that have bitten an infected wild or domesticated animal, or through an aerosol produced by domesticated animals such as sheep or cattle. The presence of a plasmid is believed to be associated with virulence and pathogenicity, however C. burnetii isolates containing plasmid QpDG are avirulent in guinea pigs and plasmidless isolates have been associated with endocarditis in humans. Coxiella burnetii has a developmental life cycle, and can grow vegetatively through binary fission, or asymmetrically and produce a spore-like cell. The spore-like cell may enable the organism to exist extracellularly for small amounts of time. This bacterium is an obligate intracellular pathogen. It is endocytosed by a host cell, a macrophage for example, and lives and replicates inside the phagolysozome, a unique property of this organism. The genome encodes proteins that have a higher than average pI, which may enable adaptation to the acidic environment of the phagolysozome. The chromosome also contains genes for a number of detoxification and stress response proteins such as dismutases that allow growth in the oxidative environment. The type IV system is similar to the one found in Legionella, which may be important for intracellular survival. This organism produces numerous ankyrin-repeat proteins that may be involved in interactions with the host cell. The genome has 83 pseudogenes, which may be a result of the typical genome-wide degradation observed with other intracellular organisms and also has a group I intron in the 23S ribosomal RNA gene.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002971:1545924:1548331154833115493591029Coxiella burnetii RSA 493, complete genomehypothetical protein0691
NC_011528:1769349:1771667177166717726951029Coxiella burnetii CbuK_Q154, complete genomesuccinylglutamate desuccinylase/aspartoacylase family protein0690
NC_010117:1633447:1635713163571316367411029Coxiella burnetii RSA 331, complete genomesuccinylglutamate desuccinylase/aspartoacylase family protein0689
NC_007963:1370903:1375005137500513760841080Chromohalobacter salexigens DSM 3043, complete genomeSuccinylglutamate desuccinylase/aspartoacylase1e-93343
NC_009092:4337617:4367392436739243684141023Shewanella loihica PV-4, complete genomeSuccinylglutamate desuccinylase/aspartoacylase1e-88326
NC_011729:4073761:408952040895204090482963Cyanothece sp. PCC 7424 chromosome, complete genomesuccinylglutamate desuccinylase/aspartoacylase3e-86318
NC_008321:3189974:3208414320841432094271014Shewanella sp. MR-4, complete genomeSuccinylglutamate desuccinylase/aspartoacylase1e-83310
NC_010546:2711929:271415027141502715103954Cyanothece sp. ATCC 51142 chromosome circular, complete sequencehypothetical protein2e-83309
NC_012803:2454380:2471686247168624728011116Micrococcus luteus NCTC 2665, complete genomepredicted deacylase1e-67257
NC_015638:923660:941010941010941984975Lacinutrix sp. 5H-3-7-4 chromosome, complete genomesuccinylglutamate desuccinylase/aspartoacylase7e-60231
NC_014729:1185294:1187089118708911881171029Halogeometricum borinquense DSM 11551 chromosome, complete genomedeacylase4e-48192
NC_013967:2641433:2641433264143326424581026Haloferax volcanii DS2 chromosome, complete genomehypothetical protein2e-47189
NC_015948:1636491:1650576165057616515981023Haloarcula hispanica ATCC 33960 chromosome chromosome I, completesuccinylglutamate desuccinylase/aspartoacylase5e-42171
NC_016940:3696570:371241837124183713377960Saprospira grandis str. Lewin chromosome, complete genomesuccinylglutamate desuccinylase/aspartoacylase2e-36152
NC_013202:771161:811596811596812552957Halomicrobium mukohataei DSM 12286, complete genomeSuccinylglutamate desuccinylase/aspartoacylase6e-27121
NC_019974:1184871:1194031119403111951521122Natronococcus occultus SP4, complete genomeputative deacylase1e-24114
NC_015591:1161007:1177880117788011788901011Sinorhizobium meliloti AK83 chromosome 3, complete sequencesuccinylglutamate desuccinylase/aspartoacylase7e-2098.6
NC_018679:2211000:2228208222820822292541047Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completesuccinylglutamate desuccinylase/aspartoacylase5e-1995.5
NC_002678:4885790:492975849297584930753996Mesorhizobium loti MAFF303099, complete genomehypothetical protein4e-1272.4
NC_019973:5838000:584149458414945842492999Mesorhizobium australicum WSM2073, complete genomeputative deacylase6e-1168.6
NC_014923:5909000:591253459125345913532999Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeSuccinylglutamate desuccinylase/aspartoacylase6e-1168.6
NC_015675:6464000:646720564672056468203999Mesorhizobium opportunistum WSM2075 chromosome, complete genomeSuccinylglutamate desuccinylase/aspartoacylase6e-1168.6
NC_008786:2425314:2440659244065924416901032Verminephrobacter eiseniae EF01-2, complete genomeSuccinylglutamate desuccinylase/aspartoacylase8e-1168.2
NC_002947:4994335:501911450191145020109996Pseudomonas putida KT2440, complete genomehypothetical protein2e-0963.9
NC_008260:187269:187994187994188983990Alcanivorax borkumensis SK2, complete genomehypothetical protein5e-0858.9
NC_019748:1846500:1870592187059218716471056Stanieria cyanosphaera PCC 7437, complete genomeSuccinylglutamate desuccinylase/aspartoacylase2e-0757.4
NC_014328:2467239:247445224744522475180729Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein3e-0756.2