Pre_GI: BLASTN Hits

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Query: NC_009664:1434974 Kineococcus radiotolerans SRS30216, complete genome

Start: 1434974, End: 1457886, Length: 22913

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013093:72220007222000724526323264Actinosynnema mirum DSM 43827, complete genome1e-66262BLASTN svgBLASTP svg
NC_011886:40466140466142708122421Arthrobacter chlorophenolicus A6, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_021150:49296704929670497270143032Azotobacter vinelandii CA6, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_021150:33039593303959332159917641Azotobacter vinelandii CA6, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012560:49296834929683497271443032Azotobacter vinelandii DJ, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012560:33039613303961332159917639Azotobacter vinelandii DJ, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014933:31825531825534288624632Bacteroides helcogenes P 36-108 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012724:24435002443500246405820559Burkholderia glumae BGR1 chromosome 1, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_013131:79452807945280799850753228Catenulispora acidiphila DSM 44928, complete genome6e-35157BLASTN svgBLASTP svg
NC_008278:18450001845000186972124722Frankia alni ACN14a, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_009921:8147947*8147947818742439478Frankia sp. EAN1pec, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014666:6940532*6940532696752226991Frankia sp. EuI1c chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015656:381554*38155440733625783Frankia symbiont of Datisca glomerata chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015656:1592021*1592021161171419694Frankia symbiont of Datisca glomerata chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013757:14996431499643151759917957Geodermatophilus obscurus DSM 43160, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010617:920009200011540023401Kocuria rhizophila DC2201, complete genome1e-63252BLASTN svgBLASTP svg
NC_013729:2157785*2157785219409936315Kribbella flavida DSM 17836, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014106:54587*545877853323947Lactobacillus crispatus ST1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_018528:65000*650009177626777Lactobacillus helveticus R0052 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015602:1810500*1810500183260222103Lactobacillus kefiranofaciens ZW3 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012803:1094679*1094679111581321135Micrococcus luteus NCTC 2665, complete genome5e-26127BLASTN svgBLASTP svg
NC_014391:1226922*1226922125015223231Micromonospora aurantiaca ATCC 27029 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_014815:1490957*1490957151776526809Micromonospora sp. L5 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_013235:1938889*1938889196008021192Nakamurella multipartita DSM 44233, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014210:5309121*5309121533359924479Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,3e-21111BLASTN svgBLASTP svg
NC_014210:72371972371974915525437Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,5e-1177.8BLASTN svgBLASTP svg
NC_011770:33966373396637341954422908Pseudomonas aeruginosa LESB58, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_008463:31688373168837319814929313Pseudomonas aeruginosa UCBPP-PA14, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_007492:11936261193626121699723372Pseudomonas fluorescens PfO-1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003295:11277811277813226319486Ralstonia solanacearum GMI1000, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009142:67295126729512675813128620Saccharopolyspora erythraea NRRL 2338, complete genome3e-46194BLASTN svgBLASTP svg
NC_013947:46039846039849522334826Stackebrandtia nassauensis DSM 44728 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_003155:92149492149494438122888Streptomyces avermitilis MA-4680, complete genome7e-44186BLASTN svgBLASTP svg
NC_018750:62378756237875626148023606Streptomyces venezuelae ATCC 10712, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007333:26745962674596270047725882Thermobifida fusca YX, complete genome6e-35157BLASTN svgBLASTP svg
NC_007333:3360000*3360000337759917600Thermobifida fusca YX, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_011961:52883752883754823519399Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_015434:1313979*1313979133209918121Verrucosispora maris AB-18-032 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_015434:228912*22891225262723716Verrucosispora maris AB-18-032 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013530:42354042354044649822959Xylanimonas cellulosilytica DSM 15894, complete genome1e-60242BLASTN svgBLASTP svg