Pre_GI: BLASTP Hits

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Query: NC_009664:63230:79091 Kineococcus radiotolerans SRS30216, complete genome

Start: 79091, End: 79912, Length: 822

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020453:3103549:310536931053693106160792Agromonas oligotrophica S58 DNA, complete genomehydroxypyruvate isomerase1e-62239
NC_015733:3736104:378104337810433781798756Pseudomonas putida S16 chromosome, complete genomehydroxypyruvate isomerase5e-60231
NC_010498:4967724:497439449743944975176783Escherichia coli SMS-3-5, complete genomehydroxypyruvate isomerase Gcxl2e-59228
NC_011894:3161289:318899731889973189788792Methylobacterium nodulans ORS 2060, complete genomehydroxypyruvate isomerase3e-56218
NC_006513:2708213:272860627286062729448843Azoarcus sp. EbN1, complete genomeputative hydroxypyruvate isomerase protein5e-54211
NC_008570:1143578:114280811428081143581774Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeAP endonuclease, family 21e-49196
NC_008782:1863853:188682918868291887656828Acidovorax sp. JS42, complete genomeHydroxypyruvate isomerase5e-49194
NC_016513:317197:324142324142324918777Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completehydroxypyruvate isomerase2e-45182
NC_013416:16493:218242182422600777Aggregatibacter actinomycetemcomitans D11S-1, complete genomehydroxypyruvate isomerase1e-43176
NC_013850:2846069:284669428466942847476783Klebsiella variicola At-22 chromosome, complete genomeHydroxypyruvate isomerase5e-40164
NC_009439:3535152:353437035343703535161792Pseudomonas mendocina ymp, complete genomehydroxypyruvate isomerase2e-37155
NC_021150:1965264:196839619683961969184789Azotobacter vinelandii CA6, complete genomehydroxypyruvate isomerase protein1e-36153
NC_012560:1965251:196838319683831969171789Azotobacter vinelandii DJ, complete genomehydroxypyruvate isomerase protein1e-36153
NC_009801:3013838:304011830401183040894777Escherichia coli E24377A, complete genomeAP endonuclease, family 23e-36152
NC_011283:2836000:285675928567592857541783Klebsiella pneumoniae 342 chromosome, complete genomeAP endonuclease, family 24e-36151
NC_011283:2836000:283983128398312840613783Klebsiella pneumoniae 342 chromosome, complete genomeAP endonuclease, family 24e-36151
NC_016856:3026426:307826930782693079045777Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein1e-34146
NC_016860:3029272:308146230814623082238777Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-34146
NC_016863:2974333:302652130265213027297777Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein1e-34146
NC_017046:3027161:307934830793483080124777Salmonella enterica subsp. enterica serovar Typhimurium str. 798hydroxypyruvate isomerase1e-34146
NC_003197:3005842:305803230580323058808777Salmonella typhimurium LT2, complete genomeputative endonuclease1e-34146
NC_016831:2867766:292005529200552920831777Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative hydroxypyruvate isomerase6e-33141
NC_016857:3028421:308060830806083081369762Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74YgbM protein2e-32139
NC_016810:3028421:308060830806083081369762Salmonella enterica subsp. enterica serovar Typhimurium strputative hydroxypyruvate isomerase2e-32139
NC_015381:1623587:167294016729401673710771Burkholderia gladioli BSR3 chromosome 1, complete sequencehydroxypyruvate isomerase4e-29128
NC_013729:4978401:498338749833874984196810Kribbella flavida DSM 17836, complete genomeHydroxypyruvate isomerase1e-26120
NC_010676:2658495:267663426766342677422789Burkholderia phytofirmans PsJN chromosome 2, complete sequenceHydroxypyruvate isomerase1e-21103
NC_018531:3983925:399947439994744000277804Arthrobacter sp. Rue61a chromosome, complete genomehydroxypyruvate isomerase4e-21101
NC_014041:4517999:452638645263864527327942Zunongwangia profunda SM-A87 chromosome, complete genomeprobable glyoxylate-induced protein3e-1995.9
NC_014364:2751662:276072227607222761519798Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeXylose isomerase domain protein TIM barrel5e-1995.1
NC_012032:448161:464835464835465605771Chloroflexus sp. Y-400-fl, complete genomeXylose isomerase domain protein TIM barrel6e-1994.7
NC_010175:448020:464693464693465463771Chloroflexus aurantiacus J-10-fl, complete genomeXylose isomerase domain protein TIM barrel6e-1994.7
NC_013850:3340882:335603633560363356815780Klebsiella variicola At-22 chromosome, complete genomeXylose isomerase domain protein TIM barrel2e-1789.7
NC_015379:2751342:275501627550162755807792Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative isomerase6e-1684.7
NC_015737:1724590:172892417289241729718795Clostridium sp. SY8519, complete genomehydroxypyruvate isomerase4e-1375.5
NC_013757:2858327:287227328722732873049777Geodermatophilus obscurus DSM 43160, complete genomeXylose isomerase domain protein TIM barrel5e-1375.1
NC_018531:1900619:193793319379331938709777Arthrobacter sp. Rue61a chromosome, complete genomexylose isomerase domain-containing protein6e-1374.7
NC_009832:2596344:261601126160112616790780Serratia proteamaculans 568, complete genomeXylose isomerase domain protein TIM barrel1e-1273.9
NC_014963:5034904:505526250552625056122861Terriglobus saanensis SP1PR4 chromosome, complete genomexylose isomerase domain-containing protein2e-1273.2
NC_015914:4489601:450363545036354504549915Cyclobacterium marinum DSM 745 chromosome, complete genomexylose isomerase domain-containing protein8e-1271.2
NC_011071:1178423:119365311936531194549897Stenotrophomonas maltophilia R551-3, complete genomeXylose isomerase domain protein TIM barrel2e-0859.7
NC_015947:1142206:115707511570751157971897Burkholderia sp. JV3 chromosome, complete genomexylose isomerase domain-containing protein2e-0859.7
NC_015594:489367:501140501140502024885Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completexylose isomerase domain-containing protein5e-0651.6