Pre_GI: BLASTP Hits

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Query: NC_009664:570768:573008 Kineococcus radiotolerans SRS30216, complete genome

Start: 573008, End: 573763, Length: 756

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010617:92000:987299872999436708Kocuria rhizophila DC2201, complete genomeGntR family transcriptional regulator6e-40164
NC_006510:2044347:206127920612792062007729Geobacillus kaustophilus HTA426, complete genometranscriptional regulator8e-1374.3
NC_015687:2632557:265543326554332656128696Clostridium acetobutylicum DSM 1731 chromosome, complete genomeFadR family transcriptional regulator9e-1373.9
NC_017986:331610:369185369185369934750Pseudomonas putida ND6 chromosome, complete genomeGntR family transcriptional regulator2e-1169.3
NC_007974:2097334:213104121310412131952912Ralstonia metallidurans CH34 chromosome 2, complete sequenceregulatory protein GntR, HTH3e-1168.9
NC_008148:1859888:187784118778411878557717Rubrobacter xylanophilus DSM 9941, complete genomeGntR-like protein3e-1168.9
NC_007974:2097334:213197321319732132776804Ralstonia metallidurans CH34 chromosome 2, complete sequenceregulatory protein GntR, HTH4e-1168.6
NC_014532:2989185:299424429942442994999756Halomonas elongata DSM 2581, complete genomeGntR domain protein6e-1167.8
NC_015145:1045264:104597910459791046743765Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometranscriptional regulator3e-1065.5
NC_010337:2339056:234209423420942342804711Heliobacterium modesticaldum Ice1, complete genometranscriptional regulator, GntR family4e-1065.5
NC_014618:4114004:411400441140044114774771Enterobacter cloacae SCF1 chromosome, complete genomeregulatory protein GntR HTH5e-1065.1
NC_004369:2465461:246886924688692469660792Corynebacterium efficiens YS-314, complete genomeputative transcription regulator6e-1064.7
NC_015376:1185000:118696811869681187711744Burkholderia gladioli BSR3 chromosome chromosome 2, completeGntR-like protein6e-1064.7
NC_016604:3137694:313854031385403139238699Mycobacterium rhodesiae NBB3 chromosome, complete genometranscriptional regulator1e-0963.5
NC_011886:1176238:118804211880421188722681Arthrobacter chlorophenolicus A6, complete genomeGntR domain protein3e-0962.4
NC_007912:1231436:123868412386841239451768Saccharophagus degradans 2-40, complete genome1,4-alpha-glucan branching enzyme3e-0962.4
NC_017095:119361:147716147716148471756Fervidobacterium pennivorans DSM 9078 chromosome, complete genometranscriptional regulator5e-0961.6
NC_003198:1463253:147775414777541478545792Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative regulatory protein2e-0859.7
NC_003197:1611302:161647016164701617261792Salmonella typhimurium LT2, complete genomeputative regulatory protein2e-0859.7
NC_011094:1584038:158403815840381584709672Salmonella enterica subsp. enterica serovar Schwarzengrund strregulatory protein2e-0859.7
NC_015761:1488807:149410414941041494778675Salmonella bongori NCTC 12419, complete genomeregulatory protein2e-0859.7
NC_016856:1621279:162656716265671627238672Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative regulatory protein2e-0859.7
NC_016860:1614280:161428016142801614951672Salmonella enterica subsp. enterica serovar Typhimurium strputative regulatory protein2e-0859.7
NC_007644:1352794:135436113543611355110750Moorella thermoacetica ATCC 39073, complete genomeregulatory protein GntR, HTH2e-0859.7
NC_006582:1297039:1310905131090513123201416Bacillus clausii KSM-K16, complete genometranscriptional regulator, GntR family3e-0858.9
NC_014550:2562053:256446125644612565135675Arthrobacter arilaitensis Re117, complete genomeputative GntR family transcriptional regulator5e-0858.2
NC_012962:1317602:133951513395151340267753Photorhabdus asymbiotica, complete genomeregulatory protein, gntr5e-0858.2
NC_011740:2737467:274186427418642742535672Escherichia fergusonii ATCC 35469, complete genomeputative gntR family regulatory protein7e-0857.8
NC_004193:375416:394239394239394949711Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator7e-0857.8
NC_013526:105195:119507119507120259753Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeGntR domain protein1e-0757.4
NC_003888:3602753:360891636089163609695780Streptomyces coelicolor A3(2), complete genomekorSA, regulatory protein1e-0757.4
NC_007953:811500:823033823033823689657Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, GntR family2e-0756.6
NC_003888:6103534:613628961362896137068780Streptomyces coelicolor A3(2), complete genometranscriptional regulator1e-0756.6
NC_014479:2505823:252667125266712527399729Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeGntR family transcriptional regulator1e-0756.6
NC_010184:4425676:443665044366504437294645Bacillus weihenstephanensis KBAB4, complete genomeregulatory protein GntR HTH2e-0756.2
NC_007907:5185510:522868352286835229384702Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-0756.2
NC_005945:4399756:441179444117944412438645Bacillus anthracis str. Sterne, complete genometranscriptional regulator, GntR family3e-0755.8
NC_014335:4327584:433961243396124340256645Bacillus cereus biovar anthracis str. CI chromosome, completeGntR family transcriptional regulator3e-0755.8
NC_006274:4448293:445951244595124460156645Bacillus cereus E33L, complete genometranscriptional regulator, GntR family3e-0755.8
NC_012472:4400420:440866344086634409307645Bacillus cereus 03BB102, complete genometranscriptional regulator, GntR family3e-0755.8
NC_003997:4399067:441110544111054411749645Bacillus anthracis str. Ames, complete genometranscriptional regulator, GntR family3e-0755.8
NC_007530:4400152:441123244112324411876645Bacillus anthracis str. 'Ames Ancestor', complete genometranscriptional regulator, gntr family3e-0755.8
NC_014171:4447856:445992144599214460565645Bacillus thuringiensis BMB171 chromosome, complete genomeGntR family transcriptional regulator3e-0755.8
NC_007712:433500:437760437760438524765Sodalis glossinidius str. 'morsitans', complete genomeputative transcriptional regulator3e-0755.8
NC_011658:4379274:438888943888894389533645Bacillus cereus AH187 chromosome, complete genomeGntR family transcriptional regulator3e-0755.8
NC_011773:4461758:447283844728384473482645Bacillus cereus AH820 chromosome, complete genomeGntR family transcriptional regulator3e-0755.8
NC_011663:4579777:458252545825254583277753Shewanella baltica OS223 chromosome, complete genometranscriptional regulator PdhR2e-0755.8
NC_009665:4675289:468162246816224682374753Shewanella baltica OS185 chromosome, complete genometranscriptional regulator PdhR2e-0755.8
NC_019673:7797666:780755578075557808226672Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, GntR family2e-0755.8
NC_020995:245671:2499292499292513741446Enterococcus casseliflavus EC20, complete genomehypothetical protein3e-0755.8
NC_017200:4401945:441506644150664415710645Bacillus thuringiensis serovar finitimus YBT-020 chromosome,GntR family transcriptional regulator3e-0755.8
NC_008321:458811:474586474586475338753Shewanella sp. MR-4, complete genomeregulatory protein GntR, HTH3e-0755.8
NC_016771:4333000:434267243426724343316645Bacillus cereus NC7401, complete genomeGntR family transcriptional regulator3e-0755.8
NC_012659:4399094:441113244111324411776645Bacillus anthracis str. A0248, complete genomeGntR family transcriptional regulator3e-0755.8
NC_016779:4361140:437332243733224373909588Bacillus cereus F837/76 chromosome, complete genomeGntR family transcriptional regulator3e-0755.5
NC_015556:4118304:413267941326794133422744Pseudomonas fulva 12-X chromosome, complete genomeGntR domain protein3e-0755.5
NC_008027:775896:799660799660800427768Pseudomonas entomophila L48, complete genometranscriptional regulator, GntR family4e-0755.1
NC_009674:3344000:335662333566233357240618Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeregulatory protein GntR HTH5e-0755.1
NC_015733:3923800:392690539269053927591687Pseudomonas putida S16 chromosome, complete genomeGntR family transcriptional regulator6e-0754.7
NC_011831:1336779:134177413417741342454681Chloroflexus aggregans DSM 9485, complete genomeregulatory protein GntR HTH6e-0754.7
NC_015594:332432:349319349319350053735Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeGntR domain-containing protein6e-0754.7
NC_011725:4562709:457098345709834571552570Bacillus cereus B4264 chromosome, complete genomeGntR family transcriptional regulator7e-0754.3
NC_007606:3755155:377484737748473775623777Shigella dysenteriae Sd197, complete genometranscriptional regulator1e-0653.9
NC_014532:349384:349384349384350133750Halomonas elongata DSM 2581, complete genometranscriptional regulator, GntR family1e-0653.9
NC_015761:4355335:437435443743544375127774Salmonella bongori NCTC 12419, complete genomeuxu operon transcriptional regulator1e-0653.5
NC_016835:128757:1459111459111474551545Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,transcriptional regulator with HTH domain and aminotransferase domain1e-0653.5
NC_015656:1469501:148617614861761486967792Frankia symbiont of Datisca glomerata chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain1e-0653.5
NC_004337:3590323:375165237516523752428777Shigella flexneri 2a str. 301, complete genometranscriptional regulator1e-0653.5
NC_012759:3648500:366540336654033666179777Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional repressor LldR1e-0653.5
NC_015856:268034:293167293167293937771Collimonas fungivorans Ter331 chromosome, complete genomeputative D-glucarate or D-galactorate regulator, GntR family2e-0653.1
NC_013131:9711508:973378897337889734621834Catenulispora acidiphila DSM 44928, complete genomeregulatory protein GntR HTH2e-0653.1
NC_013729:2258582:227234522723452272686342Kribbella flavida DSM 17836, complete genometranscriptional regulator, GntR family2e-0652.8
NC_011750:2928990:2968066296806629694001335Escherichia coli IAI39 chromosome, complete genomebifunctional aminotransaminase/GntR family transcriptional regulator3e-0652.4
NC_008148:583030:583030583030583788759Rubrobacter xylanophilus DSM 9941, complete genomeGntR-like protein3e-0652.4
NC_003888:4613000:462376646237664624524759Streptomyces coelicolor A3(2), complete genomeGntR-family regulatory protein4e-0652
NC_014500:2688095:2689487268948726909741488Dickeya dadantii 3937 chromosome, complete genomeputative GntR-family regulatory protein and aminotransferase near polyamine transporter4e-0652
NC_010623:1871492:189809018980901898899810Burkholderia phymatum STM815 chromosome 2, complete sequenceregulatory protein GntR HTH6e-0651.6
NC_014666:7152782:716610971661097166882774Frankia sp. EuI1c chromosome, complete genometranscriptional regulator, GntR family5e-0651.6
NC_013929:5927935:594000159400015940780780Streptomyces scabiei 87.22 chromosome, complete genomeGntR family transcriptional regulator5e-0651.6
NC_016023:755237:755237755237755947711Bacillus coagulans 36D1 chromosome, complete genomeGntR domain-containing protein5e-0651.6
NC_014323:245979:250336250336251085750Herbaspirillum seropedicae SmR1 chromosome, complete genomeGntR family transcription regulator protein7e-0651.2
NC_012559:2309566:231322923132292313960732Laribacter hongkongensis HLHK9, complete genomeprobable transcriptional regulator, GntR family7e-0651.2
NC_004631:4687270:470799047079904708763774Salmonella enterica subsp. enterica serovar Typhi Ty2, completeuxu operon transcriptional regulator7e-0651.2
NC_011147:4460726:449757144975714498344774Salmonella enterica subsp. enterica serovar Paratyphi A strDNA-binding transcriptional repressor UxuR7e-0651.2
NC_010102:4745949:476664047666404767365726Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-0651.2
NC_012125:4716000:474604547460454746818774Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA-binding transcriptional repressor UxuR6e-0651.2
NC_006905:4638707:466873046687304669503774Salmonella enterica subsp. enterica serovar Choleraesuis strtranscriptional repressor for uxu operon6e-0651.2
NC_015064:1355065:137103413710341371891858Acidobacterium sp. MP5ACTX9 chromosome, complete genomeGntR domain protein9e-0650.8
NC_021066:1393750:1395734139573413970681335Raoultella ornithinolytica B6, complete genomeGntR family transcriptional regulator1e-0550.4
NC_021177:4124839:413883841388384139617780Streptomyces fulvissimus DSM 40593, complete genomekorSA, regulatory protein1e-0550.4