Pre_GI: BLASTP Hits

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Query: NC_009664:4696961:4754108 Kineococcus radiotolerans SRS30216, complete genome

Start: 4754108, End: 4755490, Length: 1383

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009664:63230:7370973709750071299Kineococcus radiotolerans SRS30216, complete genomeextracellular solute-binding protein family 16e-48192
NC_013729:2157785:2188047218804721893661320Kribbella flavida DSM 17836, complete genomeextracellular solute-binding protein family 12e-32140
NC_007761:57199:7815178151794371287Rhizobium etli CFN 42, complete genomeprobable sugar ABC transporter, substrate-binding protein2e-22107
NC_012669:1011473:1031381103138110327061326Beutenbergia cavernae DSM 12333, complete genomeextracellular solute-binding protein family 12e-21104
NC_018720:311844:3222713222713236261356Bifidobacterium asteroides PRL2011 chromosome, complete genomeABC transporter, extracellular substrate binding protein2e-21104
NC_016582:10159486:1019894910198949102001241176Streptomyces bingchenggensis BCW-1 chromosome, complete genomeextracellular solute-binding protein4e-21102
NC_013406:1217385:1219223121922312205481326Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 1 extracellular solute-binding protein1e-1584.7
NC_013093:1036772:1083604108360410848901287Actinosynnema mirum DSM 43827, complete genomeextracellular solute-binding protein family 12e-1584
NC_019896:3281193:3301197330119733024621266Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein3e-1583.6
NC_018720:1611213:1621188162118816224951308Bifidobacterium asteroides PRL2011 chromosome, complete genomeABC transporter, extracellular substrate binding protein7e-1582.4
NC_015145:3657103:3668072366807236693851314Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomecarbohydrate ABC transporter substrate-binding protein, CUT1 family2e-1377
NC_002570:1195356:1209140120914012104441305Bacillus halodurans C-125, complete genomehypothetical protein7e-1272.4
NC_014652:163347:1809161809161822321317Caldicellulosiruptor hydrothermalis 108 chromosome, completeextracellular solute-binding protein family 17e-1168.9
NC_020260:440000:4639564639564652451290Cronobacter sakazakii Sp291, complete genomeABC transporter periplasmic binding protein2e-1067.4
NC_020134:1783000:1783007178300717843291323Clostridium stercorarium subsp. stercorarium DSM 8532, completeextracellular solute-binding protein, family 14e-0963.2
NC_012880:2399205:2416897241689724181891293Dickeya dadantii Ech703, complete genomeextracellular solute-binding protein family 15e-0859.7
NC_020995:751311:7625637625637638551293Enterococcus casseliflavus EC20, complete genomehypothetical protein8e-0858.9
NC_003366:461602:4790084790084802761269Clostridium perfringens str. 13, complete genomehypothetical protein2e-0757.4
NC_019896:1989997:1999551199955120007561206Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeSugar ABC transporter substrate-binding protein4e-0756.6