Pre_GI: BLASTP Hits

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Query: NC_009664:452195:460331 Kineococcus radiotolerans SRS30216, complete genome

Start: 460331, End: 461506, Length: 1176

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013521:4240468:2337233734671131Sanguibacter keddieii DSM 10542, complete genomeDNA polymerase III, beta subunit8e-33141
NC_008711:4579997:1995199531191125Arthrobacter aurescens TC1, complete genomeDNA polymerase III, beta subunit7e-32138
NC_014151:4106624:2426242635561131Cellulomonas flavigena DSM 20109 chromosome, complete genomeDNA polymerase III, beta subunit2e-31136
NC_008541:4679022:1965196530891125Arthrobacter sp. FB24 chromosome 1, complete sequenceDNA polymerase III, beta subunit2e-30133
NC_015145:4232283:2347234734711125Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeDNA polymerase III subunit beta5e-30132
NC_011886:4376261:2127212732511125Arthrobacter chlorophenolicus A6, complete genomeDNA polymerase III, beta subunit1e-29130
NC_014830:4012999:2567256736941128Intrasporangium calvum DSM 43043 chromosome, complete genomeDNA polymerase III, beta subunit1e-28127
NC_013510:1:2867286739941128Thermomonospora curvata DSM 43183, complete genomeDNA polymerase III, beta subunit8e-28125
NC_014550:3839389:2256225633831128Arthrobacter arilaitensis Re117, complete genomeDNA polymerase III subunit beta1e-26120
NC_013595:10329633:2672267238111140Streptosporangium roseum DSM 43021, complete genomeDNA-directed DNA polymerase1e-26120
NC_014210:5752651:3397339745361140Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,DNA polymerase III, beta subunit2e-23110
NC_014211:439611:4582334582334593871155Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmidDNA polymerase III, beta subunit7e-23108
NC_007333:1:2824282439421119Thermobifida fusca YX, complete genomeDNA polymerase III subunit beta1e-22107
NC_007333:3626510:2824282439421119Thermobifida fusca YX, complete genomeDNA polymerase III subunit beta1e-22107
NC_015312:1:2771277139011131Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeDNA polymerase III subunit beta6e-22105
NC_006361:4149701:4158604415860441597491146Nocardia farcinica IFM 10152, complete genomeDNA polymerase III subunit beta1e-21104
NC_002677:3253057:2081208132801200Mycobacterium leprae TN, complete genomeDNA polymerase III subunit beta2e-21103
NC_011896:3252925:2081208132801200Mycobacterium leprae Br4923, complete genomeputative DNA polymerase III, beta subunit2e-21103
NC_002677:1:2081208132801200Mycobacterium leprae TN, complete genomeDNA polymerase III subunit beta2e-21103
NC_011896:1:2081208132801200Mycobacterium leprae Br4923, complete genomeputative DNA polymerase III, beta subunit2e-21103
NC_003888:4251867:4268713426871342698431131Streptomyces coelicolor A3(2), complete genomeDNA polymerase III subunit beta4e-2099.4
NC_008578:2431074:1921192130841164Acidothermus cellulolyticus 11B, complete genomeDNA polymerase III, beta subunit8e-2098.6
NC_013093:1:2628262837641137Actinosynnema mirum DSM 43827, complete genomeDNA polymerase III, beta subunit2e-1997.4
NC_015067:2371428:2239223933631125Bifidobacterium longum subsp. longum JCM 1217, complete genomeDNA polymerase III beta subunit4e-1995.9
NC_004307:1620500:1622403162240316235271125Bifidobacterium longum NCC2705, complete genomeDNA polymerase III subunit beta4e-1995.9
NC_015052:2383865:2239223933631125Bifidobacterium longum subsp. infantis 157F, complete genomeDNA polymerase III subunit beta4e-1995.9
NC_010816:1660066:1664070166407016651941125Bifidobacterium longum DJO10A, complete genomeDNA polymerase sliding clamp subunit4e-1995.9
NC_014656:1634397:1638401163840116395251125Bifidobacterium longum subsp. longum BBMN68 chromosome, completednan4e-1995.9
NC_017221:2268276:2270009227000922711331125Bifidobacterium longum subsp. longum KACC 91563 chromosome,DNA polymerase III subunit beta4e-1995.9
NC_007929:1805000:1532153226711140Lactobacillus salivarius subsp. salivarius UCC118, complete genomeDNA polymerase III, beta chain3e-1893.6
NC_014393:1:1715171528181104Clostridium cellulovorans 743B chromosome, complete genomeDNA polymerase III, beta subunit3e-1893.2
NC_015425:2752482:2770223277022327713261104Clostridium botulinum BKT015925 chromosome, complete genomeDNA polymerase III subunit beta1e-1791.3
NC_018750:3964784:3969808396980839709381131Streptomyces venezuelae ATCC 10712, complete genomeDNA polymerase III beta subunit7e-1788.6
NC_015953:3684065:3689253368925336903831131Streptomyces sp. SirexAA-E chromosome, complete genomeDNA polymerase III subunit beta7e-1788.6
NC_013929:5135285:5137597513759751387271131Streptomyces scabiei 87.22 chromosome, complete genomeDNA polymerase III subunit beta1e-1687.8
NC_015564:4727630:1972197235641593Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genomeDNA polymerase III subunit beta2e-1687.4
NC_008593:2527064:2544786254478625458891104Clostridium novyi NT, complete genomeDNA polymerase III, beta subunit4e-1582.8
NC_015125:1597600:1601432160143216025891158Microbacterium testaceum StLB037, complete genomeDNA polymerase sliding clamp subunit6e-1582
NC_018665:1:1998199831311134Exiguobacterium antarcticum B7 chromosome, complete genomeDNA polymerase III subunit beta9e-1581.6
NC_014363:2035141:2044311204431120454141104Olsenella uli DSM 7084 chromosome, complete genomeDNA polymerase III, beta subunit1e-1481.3
NC_008261:1:2079207931791101Clostridium perfringens ATCC 13124, complete genomeDNA polymerase III, beta subunit2e-1480.5
NC_003366:1:2078207831781101Clostridium perfringens str. 13, complete genomeDNA polymerase III subunit beta2e-1480.5
NC_008262:1:1903190330031101Clostridium perfringens SM101, complete genomeDNA polymerase III, beta subunit2e-1480.5
NC_020291:1:1718171828181101Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeDNA polymerase III subunit beta3e-1479.7
NC_003030:1:2064206431641101Clostridium acetobutylicum ATCC 824, complete genomeDNA polymerase III subunit beta6e-1479
NC_015687:1:2064206431641101Clostridium acetobutylicum DSM 1731 chromosome, complete genomeDNA polymerase III subunit beta6e-1479
NC_006087:1:2083208332281146Leifsonia xyli subsp. xyli str. CTCB07, complete genomeDNA polymerase III subunit beta7e-1478.6
NC_013204:3613824:3231323143311101Eggerthella lenta DSM 2243, complete genomeDNA polymerase III, beta subunit7e-1478.6
NC_015673:1:2262226234461185Corynebacterium resistens DSM 45100 chromosome, complete genomeDNA polymerase III subunit beta4e-1376.3
NC_012673:1679744:1697774169777416989131140Exiguobacterium sp. AT1b, complete genomeDNA polymerase III, beta subunit6e-1375.5
NC_011837:1:1615161527181104Clostridium kluyveri NBRC 12016, complete genomeDNA polymerase III subunit beta7e-1375.5
NC_009706:1:1615161527181104Clostridium kluyveri DSM 555 chromosome, complete genomeDNA polymerase III subunit beta7e-1375.5
NC_012658:1:1773177328761104Clostridium botulinum Ba4 str. 657 chromosome, complete genomeDNA polymerase III subunit beta8e-1375.1
NC_008702:1:1502150226111110Azoarcus sp. BH72, complete genomeDNA-directed DNA polymerase1e-1274.7
NC_014328:1:1710171028131104Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeDNA polymerase III subunit beta2e-1273.9
NC_006085:2544421:1868186833791512Propionibacterium acnes KPA171202, complete genomeDNA polymerase III subunit beta2e-1273.9
NC_009698:1:1610161027131104Clostridium botulinum A str. Hall chromosome, complete genomeDNA polymerase III subunit beta3e-1273.2
NC_009697:1:1610161027131104Clostridium botulinum A str. ATCC 19397 chromosome, completeDNA polymerase III subunit beta3e-1273.2
NC_009495:1:1610161027131104Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeDNA polymerase III subunit beta3e-1273.2
NC_010520:1:1614161427171104Clostridium botulinum A3 str. Loch Maree, complete genomeDNA polymerase III, beta chain4e-1272.8
NC_007164:2446879:2369236935531185Corynebacterium jeikeium K411, complete genomeDNA polymerase III, beta subunit5e-1272.4
NC_014039:2479500:2131213133751245Propionibacterium acnes SK137 chromosome, complete genomeDNA polymerase III, beta subunit2e-1170.9
NC_009952:3522370:3546223354622335473411119Dinoroseobacter shibae DFL 12, complete genomeDNA polymerase III subunit beta3e-1169.7
NC_015759:760671:7831967831967843261131Weissella koreensis KACC 15510 chromosome, complete genomeDNA polymerase III subunit beta5e-1168.9
NC_017297:1:1601160127041104Clostridium botulinum F str. 230613 chromosome, complete genomeDNA polymerase III subunit beta9e-1168.6
NC_009699:1:1601160127041104Clostridium botulinum F str. Langeland chromosome, complete genomeDNA polymerase III subunit beta9e-1168.6
NC_012563:1:1757175728601104Clostridium botulinum A2 str. Kyoto, complete genomeDNA polymerase III, beta chain9e-1168.6
NC_010516:1:1638163827411104Clostridium botulinum B1 str. Okra, complete genomeDNA polymerase III, beta chain9e-1168.6
NC_015389:2101841:3292329243951104Coriobacterium glomerans PW2 chromosome, complete genomeDNA polymerase III, beta subunit1e-1068.2
NC_009922:1:1642164227481107Alkaliphilus oremlandii OhILAs, complete genomeDNA polymerase III, beta subunit1e-1067.8
NC_011662:1:1813181329221110Thauera sp. MZ1T, complete genomeDNA polymerase III, beta subunit4e-1066.2
NC_004557:32094:4986149861509641104Clostridium tetani E88, complete genomeDNA polymerase III subunit beta4e-1066.2
NC_010172:5447189:1870187029911122Methylobacterium extorquens PA1, complete genomeDNA polymerase III, beta subunit6e-1065.9
NC_010723:1:1758175828581101Clostridium botulinum E3 str. Alaska E43, complete genomeDNA polymerase III, beta subunit4e-1065.9
NC_007350:1:2124212432541131Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,DNA polymerase III beta subunit4e-1065.9
NC_011757:5742290:3266326643871122Methylobacterium chloromethanicum CM4, complete genomeDNA polymerase III, beta subunit4e-1065.9
NC_015859:952500:9725569725569735601005Corynebacterium variabile DSM 44702 chromosome, complete genomehypothetical protein6e-1065.5
NC_015275:1:1617161727231107Clostridium lentocellum DSM 5427 chromosome, complete genomeDNA polymerase III, beta subunit7e-1065.5
NC_010674:1:1806180629061101Clostridium botulinum B str. Eklund 17B, complete genomeDNA polymerase III, beta subunit8e-1065.1
NC_021182:1:2006200631061101Clostridium pasteurianum BC1, complete genomeDNA polymerase III, beta subunit1e-0964.7
NC_013170:1:1872187229691098Cryptobacterium curtum DSM 15641, complete genomeDNA polymerase III, beta subunit2e-0964.3
NC_013410:1651000:1653772165377216548931122Fibrobacter succinogenes subsp. succinogenes S85 chromosome,DNA polymerase III subunit beta2e-0963.9
NC_006177:3549467:1600160027061107Symbiobacterium thermophilum IAM 14863, complete genomeDNA polymerase III beta subunit2e-0963.9
NC_005125:3420270:3439067343906734401971131Gloeobacter violaceus PCC 7421, complete genomeDNA polymerase III subunit beta2e-0963.9
NC_017167:1648913:1786992178699217880921101Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1DNA polymerase III subunit beta2e-0963.5
NC_017208:1:1802180229471146Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeDNA polymerase III subunit beta3e-0963.2
NC_014171:1:1802180229471146Bacillus thuringiensis BMB171 chromosome, complete genomeDNA polymerase III subunit beta4e-0962.8
NC_006513:1695487:1695487169548716965901104Azoarcus sp. EbN1, complete genomeDNA polymerase III (Beta chain)6e-0962.4
NC_004461:1:2026202631591134Staphylococcus epidermidis ATCC 12228, complete genomeDNA polymerase III subunit beta8e-0962
NC_005956:152497:1605391605391616601122Bartonella henselae str. Houston-1, complete genomeDNA polymerase III subunit beta1e-0861.6
NC_005955:139907:1479611479611490821122Bartonella quintana str. Toulouse, complete genomeDNA polymerase III subunit beta2e-0860.8
NC_011567:1:1901190130371137Anoxybacillus flavithermus WK1, complete genomeDNA polymerase sliding clamp subunit4e-0859.7
NC_014098:3372000:1924192430511128Bacillus tusciae DSM 2912 chromosome, complete genomeDNA polymerase III, beta subunit4e-0859.3
NC_014926:6652:8315831594091095Thermovibrio ammonificans HB-1 chromosome, complete genomeDNA polymerase III, beta subunit4e-0859.3
NC_007498:3655304:1680168027981119Pelobacter carbinolicus DSM 2380, complete genomeDNA polymerase III, beta subunit6e-0858.9
NC_020829:1:1563156326691107Pseudomonas denitrificans ATCC 13867, complete genomeDNA polymerase III subunit beta1e-0758.2
NC_011297:1357947:1377443137744313785461104Dictyoglomus thermophilum H-6-12, complete genomeDNA polymerase III, beta subunit1e-0758.2
NC_002516:6255854:2056205631591104Pseudomonas aeruginosa PAO1, complete genomeDNA polymerase III subunit beta2e-0757.4
NC_018664:1:1683168327801098Clostridium acidurici 9a chromosome, complete genomeDNA polymerase III subunit beta3e-0757
NC_013205:526281:5483965483965495081113Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,DNA polymerase III, beta subunit6e-0755.8
NC_017268:1:1641164127561116Treponema pallidum subsp. pallidum str. Chicago chromosome,DNA polymerase III subunit beta1e-0655.1
NC_016843:1:1641164127561116Treponema pallidum subsp. pertenue str. Gauthier chromosome,DNA-directed DNA polymerase III beta subunit1e-0655.1
NC_016842:1:1641164127561116Treponema pallidum subsp. pertenue str. SamoaD chromosome, completeDNA-directed DNA polymerase III beta subunit1e-0655.1
NC_020209:4768500:4770477477047747715801104Pseudomonas poae RE*1-1-14, complete genomeDNA polymerase III subunit beta1e-0654.7
NC_015565:2879603:1613161327101098Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeDNA polymerase III subunit beta1e-0654.7
NC_020054:4028444:4049803404980340509181116Fibrella aestuarina BUZ 2 drat genomeDNA polymerase III subunit beta2e-0654.3
NC_002947:8394:1110311103122061104Pseudomonas putida KT2440, complete genomeDNA polymerase III subunit beta3e-0653.5
NC_009512:1:1943194330461104Pseudomonas putida F1, complete genomeDNA polymerase III, beta subunit3e-0653.5
NC_015714:1:1642164227571116Treponema paraluiscuniculi Cuniculi A chromosome, complete genomeDNA-directed DNA polymerase III subunit beta4e-0653.1
NC_010322:1:2725272538281104Pseudomonas putida GB-1 chromosome, complete genomeDNA polymerase III subunit beta5e-0652.8