Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4599502 Kineococcus radiotolerans SRS30216, complete genome

Start: 4599502, End: 4600530, Length: 1029

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016582:9911497:991482899148289915778951Streptomyces bingchenggensis BCW-1 chromosome, complete genomeAraC-type DNA-binding domain-containing protein-like protein1e-59230
NC_013131:9711508:972958497295849730576993Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, AraC family5e-54211
NC_015953:6212366:623823262382326239215984Streptomyces sp. SirexAA-E chromosome, complete genomeAraC family transcriptional regulator5e-38158
NC_013595:4951396:496187849618784962771894Streptosporangium roseum DSM 43021, complete genometranscriptional regulator, AraC family4e-34145
NC_007511:1300978:132350113235011324469969Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, AraC family3e-22106
NC_007508:689046:7093377093377104041068Xanthomonas campestris pv. vesicatoria str. 85-10, complete genometranscriptional regulator, AraC family6e-2098.6
NC_015136:912276:935323935323936282960Burkholderia sp. CCGE1001 chromosome 1, complete sequenceAraC family transcriptional regulator4e-1995.9
NC_009921:5681677:569145556914555692393939Frankia sp. EAN1pec, complete genometranscriptional regulator, AraC family1e-1687.8
NC_015381:3091500:3097693309769330986941002Burkholderia gladioli BSR3 chromosome 1, complete sequenceAraC family transcriptional regulator3e-1685.9
NC_008702:1432952:1437635143763514386391005Azoarcus sp. BH72, complete genomeputative AraC-family transcriptional regulator1e-1480.9
NC_008314:1955793:196831019683101969236927Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator, AraC-family2e-1480.1
NC_013526:105195:1078841078841089061023Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genome4e-1375.9
NC_018524:5748421:5774695577469557758101116Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomebacterial regulatory helix-turn-helix s, AraC family protein9e-1374.7
NC_015376:3320818:3324114332411433251301017Burkholderia gladioli BSR3 chromosome chromosome 2, completeAraC family transcriptional regulator3e-1273.2
NC_015856:1:201942019421126933Collimonas fungivorans Ter331 chromosome, complete genomeAraC family transcriptional regulator6e-1272
NC_014217:1352777:135437213543721355301930Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, AraC family4e-1169.3
NC_014924:1701952:171627217162721717261990Pseudoxanthomonas suwonensis 11-1 chromosome, complete genometranscriptional regulator, AraC family2e-1066.6
NC_009656:115390:122819122819123664846Pseudomonas aeruginosa PA7 chromosome, complete genomeAraC family transcriptional regulator5e-1065.5
NC_016109:3875617:387791638779163878857942Kitasatospora setae KM-6054, complete genomeputative AraC family transcriptional regulator8e-1065.1
NC_006905:651732:669410669410670264855Salmonella enterica subsp. enterica serovar Choleraesuis strputative transcriptional regulator (AraC/XylS family)1e-0964.7
NC_013956:1994970:201277120127712013718948Pantoea ananatis LMG 20103 chromosome, complete genomeYkgD1e-0964.3
NC_010102:2495441:249794824979482498802855Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-0964.3
NC_010505:4990472:501048450104845011467984Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, AraC family2e-0963.9
NC_010676:3009980:301668130166813017520840Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, AraC family4e-0962.8
NC_004631:2366335:236936123693612370215855Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical araC-family transcriptional regulator9e-0961.6
NC_003198:598000:610886610886611740855Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical araC-family transcriptional regulator9e-0961.6
NC_016832:2363136:236616223661622367016855Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein9e-0961.6
NC_016816:2508204:250921625092162510118903Pantoea ananatis LMG 5342, complete genomeAraC family transcriptional regulator8e-0961.6
NC_011294:585500:598716598716599570855Salmonella enterica subsp. enterica serovar Enteritidis strAraC family transcriptional regulator7e-0961.6
NC_011274:603901:617088617088617942855Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91AraC family transcriptional regulator7e-0961.6
NC_016831:2402893:240482724048272405681855Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative araC-family transcriptional regulator7e-0961.6
NC_007912:4579873:459282945928294593707879Saccharophagus degradans 2-40, complete genomehistidine kinase1e-0861.2
NC_009921:6483660:6483660648366064847091050Frankia sp. EAN1pec, complete genometranscriptional regulator, AraC family2e-0860.5
NC_011080:610428:623665623665624519855Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator, AraC family protein2e-0860.5
NC_011094:688626:702208702208703062855Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional regulator, AraC family protein2e-0860.1
NC_003197:606048:619258619258620112855Salmonella typhimurium LT2, complete genomeputative transcriptional regulator2e-0860.1
NC_011083:654479:667688667688668542855Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transcriptional regulator, AraC family protein2e-0860.1
NC_016810:604813:618746618746619600855Salmonella enterica subsp. enterica serovar Typhimurium straraC family transcriptional regulator2e-0860.1
NC_016856:606742:619952619952620806855Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative transcriptional regulator2e-0860.1
NC_016857:604792:618746618746619600855Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative transcriptional regulator2e-0860.1
NC_016860:644095:657305657305658159855Salmonella enterica subsp. enterica serovar Typhimurium strAraC family transcriptional regulator2e-0860.1
NC_016863:606742:619951619951620805855Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transcriptional regulator2e-0860.1
NC_017046:604789:618743618743619597855Salmonella enterica subsp. enterica serovar Typhimurium str. 798araC-family transcriptional regulator2e-0860.1
NC_010682:1482365:149686514968651497827963Ralstonia pickettii 12J chromosome 1, complete sequencetranscriptional regulator, AraC family2e-0860.1
NC_011149:588895:602131602131602985855Salmonella enterica subsp. enterica serovar Agona str. SL483,transcriptional regulator, AraC family protein3e-0859.7
NC_011205:645591:664252664252665106855Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853AraC family transcriptional regulator3e-0859.7
NC_015458:2441435:244283324428332443741909Pusillimonas sp. T7-7 chromosome, complete genomeAraC family transcriptional regulator4e-0859.3
NC_011147:2247460:224996722499672250821855Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-0757.8
NC_006511:2251022:225478322547832255637855Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical araC-family transcriptional regulator1e-0757.8
NC_007946:289425:340143340143341048906Escherichia coli UTI89, complete genomehypothetical transcriptional regulator YkgD3e-0756.6
NC_015761:520858:533868533868534722855Salmonella bongori NCTC 12419, complete genomearaC family transcriptional regulator2e-0756.6
NC_011742:291237:329559329559330413855Escherichia coli S88 chromosome, complete genomeAraC family transcriptional regulator3e-0756.2
NC_008563:318993:341784341784342638855Escherichia coli APEC O1, complete genomeputative DNA-binding transcriptional regulator3e-0756.2
NC_008253:334467:396889396889397743855Escherichia coli 536, complete genomeputative transcriptional regulator, AraC family protein5e-0755.8
NC_004431:364000:404671404671405576906Escherichia coli CFT073, complete genomeHypothetical transcriptional regulator ykgD4e-0755.8
NC_003911:253400:275937275937276917981Silicibacter pomeroyi DSS-3, complete genometranscriptional regulator, AraC family4e-0755.8
NC_017986:5467279:546819554681955469016822Pseudomonas putida ND6 chromosome, complete genomeAraC family transcriptional regulator6e-0755.5
NC_014931:1044313:1051921105192110530631143Variovorax paradoxus EPS chromosome, complete genometranscriptional regulator, AraC family6e-0755.5
NC_010473:279948:295001295001295855855Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator5e-0755.5
NC_000913:303719:319451319451320305855Escherichia coli K12, complete genomepredicted DNA-binding transcriptional regulator5e-0755.5
AC_000091:303719:319451319451320305855Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator5e-0755.5
NC_012947:3487392:349167534916753492529855Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeAraC family transcriptional regulator5e-0755.5
NC_009800:349592:370824370824371678855Escherichia coli HS, complete genometranscriptional regulator, AraC family5e-0755.5
NC_011415:351810:354308354308355162855Escherichia coli SE11 chromosome, complete genomeputative transcriptional regulator5e-0755.5
NC_009512:3068495:308791530879153088736822Pseudomonas putida F1, complete genomehelix-turn-helix- domain containing protein, AraC type8e-0755.1
NC_016887:511034:514844514844515677834Nocardia cyriacigeorgica GUH-2, complete genomeputative transcriptional regulator1e-0654.3
NC_010170:4800000:489897248989724899928957Bordetella petrii, complete genometranscriptional regulator, AraC family1e-0654.3
NC_008268:7576365:758670675867067587590885Rhodococcus sp. RHA1, complete genometranscriptional regulator2e-0653.9
NC_008228:2295841:229770822977082298658951Pseudoalteromonas atlantica T6c, complete genometranscriptional regulator, AraC family2e-0653.5
NC_009901:1516340:152282915228291523641813Shewanella pealeana ATCC 700345, complete genometranscriptional regulator, AraC family2e-0653.5
NC_010334:1561691:156771815677181568530813Shewanella halifaxensis HAW-EB4, complete genometranscriptional regulator, AraC family2e-0653.5
NC_009659:1050532:109692610969261097882957Janthinobacterium sp. Marseille chromosome, complete genomeAraC family transcriptional regulator4e-0652.8
NC_009659:1050532:108859710885971089568972Janthinobacterium sp. Marseille chromosome, complete genomeAraC family transcriptional regulator4e-0652.8
NC_013947:3406000:341092034109203411810891Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, AraC family5e-0652.4
NC_011365:1103927:111400311140031114950948Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeAraC family transcriptional regulator9e-0651.6
NC_015566:5197624:521102552110255211780756Serratia sp. AS12 chromosome, complete genomeAraC family transcriptional regulator9e-0651.6