Pre_GI: BLASTP Hits

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Query: NC_009664:4347718:4355246 Kineococcus radiotolerans SRS30216, complete genome

Start: 4355246, End: 4356013, Length: 768

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014318:1537732:155626715562671557151885Amycolatopsis mediterranei U32 chromosome, complete genomeextradiol ring-cleavage dioxygenase class III protein subunit B2e-66251
NC_013510:747042:768487768487769266780Thermomonospora curvata DSM 43183, complete genomeExtradiol ring-cleavage dioxygenase class III protein subunit B2e-60232
NC_013169:1410384:141456214145621415344783Kytococcus sedentarius DSM 20547, complete genomehypothetical protein3e-53208
NC_016147:3349272:335278333527833353601819Pseudoxanthomonas spadix BD-a59 chromosome, complete genomehypothetical protein2e-35149
NC_012691:3126500:314871031487103149516807Tolumonas auensis DSM 9187, complete genomeExtradiol ring-cleavage dioxygenase class III protein subunit B3e-35148
NC_014323:625155:645540645540646382843Herbaspirillum seropedicae SmR1 chromosome, complete genomehypothetical protein5e-33141
NC_011969:1816746:183687618368761837637762Bacillus cereus Q1 chromosome, complete genomehypothetical protein9e-31134
NC_017986:5797044:582321958232195824016798Pseudomonas putida ND6 chromosome, complete genomecatalytic LigB subunit of aromatic ring-opening dioxygenase7e-31134
NC_013406:1145268:115150111515011152277777Paenibacillus sp. Y412MC10 chromosome, complete genomeExtradiol ring-cleavage dioxygenase class III protein subunit B1e-30133
NC_013446:3209000:322140432214043222264861Comamonas testosteroni CNB-2, complete genomeExtradiol ring-cleavage dioxygenase, class III1e-29130
NC_020291:1149887:116802711680271168791765Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomehypothetical protein5e-29127
NC_016935:976059:981009981009981782774Paenibacillus mucilaginosus 3016 chromosome, complete genomeoxidoreductase6e-29127
NC_015690:977131:978270978270979043774Paenibacillus mucilaginosus KNP414 chromosome, complete genomeoxidoreductase7e-29127
NC_013960:1778411:179810317981031798927825Nitrosococcus halophilus Nc4 chromosome, complete genomeExtradiol ring-cleavage dioxygenase class III protein subunit B2e-26119
NC_007484:2746078:275970327597032760527825Nitrosococcus oceani ATCC 19707, complete genomeExtradiol ring-cleavage dioxygenase, class III enzyme, subunit B5e-26118
NC_007498:197810:216528216528217325798Pelobacter carbinolicus DSM 2380, complete genomecatalytic LigB subunit of aromatic ring-opening dioxygenase5e-26117
NC_016593:1466226:146904314690431469810768Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeDioxygenase6e-26117
NC_013411:2191514:219151421915142192281768Geobacillus sp. Y412MC61, complete genomeExtradiol ring-cleavage dioxygenase class III protein subunit B1e-25116
NC_014915:1331459:133145913314591332226768Geobacillus sp. Y412MC52 chromosome, complete genomeExtradiol ring-cleavage dioxygenase class III protein subunit B1e-25116
NC_009348:3261500:326170232617023262469768Aeromonas salmonicida subsp. salmonicida A449, complete genomehypothetical protein9e-25114
NC_006512:1722138:173762517376251738422798Idiomarina loihiensis L2TR, complete genomeLigB family enzyme3e-24112
NC_016745:1548426:155435715543571555169813Oceanimonas sp. GK1 chromosome, complete genomeextradiol ring-cleavage dioxygenase III subunit B4e-24111
NC_013173:3890370:390144839014483902209762Desulfomicrobium baculatum DSM 4028, complete genomeExtradiol ring-cleavage dioxygenase class III protein subunit B4e-24111
NC_009092:2644164:265826126582612659058798Shewanella loihica PV-4, complete genomeExtradiol ring-cleavage dioxygenase, class III enzyme, subunit B7e-24110
NC_006513:286549:308696308696309532837Azoarcus sp. EbN1, complete genomeputative catalytic LigB subunit of aromatic ring-opening dioxygenase8e-24110
NC_012108:4454705:445524544552454456048804Desulfobacterium autotrophicum HRM2, complete genomeLigB9e-24110
NC_012982:2730000:275132127513212752154834Hirschia baltica ATCC 49814, complete genomeExtradiol ring-cleavage dioxygenase class III protein subunit B2e-23109
NC_015554:4724245:474038547403854741206822Alteromonas sp. SN2 chromosome, complete genomehypothetical protein2e-22105
NC_012967:3113768:311579131157913116606816Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein4e-21101
NC_016822:3485631:348913534891353489923789Shigella sonnei 53G, complete genomeLigB family dioxygenase5e-21101
NC_011750:3683760:368726436872643688079816Escherichia coli IAI39 chromosome, complete genomehypothetical protein4e-21101
AC_000091:3180275:318027531802753181090816Escherichia coli W3110 DNA, complete genomepredicted dioxygenase4e-21101
NC_009800:3224575:322645032264503227265816Escherichia coli HS, complete genomearomatic ring-opening dioxygenase4e-21101
NC_000913:3176000:317964131796413180456816Escherichia coli K12, complete genomepredicted dioxygenase4e-21101
NC_010468:694943:712136712136712951816Escherichia coli ATCC 8739, complete genomeExtradiol ring-cleavage dioxygenase class III protein subunit B4e-21101
NC_010473:3273882:327738632773863278174789Escherichia coli str. K-12 substr. DH10B, complete genomepredicted dioxygenase4e-21101
NC_012759:3063285:306678930667893067604816Escherichia coli BW2952 chromosome, complete genomehypothetical protein4e-21101
NC_012947:708064:723933723933724748816Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein4e-21101
CU928160:3263248:326444632644463265261816Escherichia coli IAI1 chromosome, complete genomeputative dioxygenase9e-21100
CU928145:3529930:353170935317093532524816Escherichia coli 55989 chromosome, complete genomeputative dioxygenase9e-21100
CP002516:693703:709572709572710387816Escherichia coli KO11, complete genomeExtradiol ring-cleavage dioxygenase class III protein subunit B9e-21100
NC_011748:3529930:353170935317093532524816Escherichia coli 55989, complete genomehypothetical protein9e-21100
AP010958:3787991:379232937923293793144816Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted dioxygenase9e-21100
CP002185:3393813:339568833956883396503816Escherichia coli W, complete genomepredicted dioxygenase9e-21100
NC_009801:3511444:351264235126423513457816Escherichia coli E24377A, complete genomearomatic ring-opening dioxygenase9e-21100
NC_011415:3443851:344572634457263446541816Escherichia coli SE11 chromosome, complete genomehypothetical protein9e-21100
NC_011745:3627438:363229736322973633112816Escherichia coli ED1a chromosome, complete genomehypothetical protein9e-21100
NC_016902:693703:709572709572710387816Escherichia coli KO11FL chromosome, complete genomeextradiol ring-cleavage dioxygenase class III protein subunit B9e-21100
NC_013364:3840000:384358638435863844401816Escherichia coli O111:H- str. 11128, complete genomeputative dioxygenase9e-21100
NC_013361:4102894:410476941047694105584816Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein9e-21100
NC_013353:3787991:379232937923293793144816Escherichia coli O103:H2 str. 12009, complete genomedioxygenase9e-21100
NC_011741:3263248:326444632644463265261816Escherichia coli IAI1 chromosome, complete genomehypothetical protein9e-21100
NC_016612:627118:630616630616631407792Klebsiella oxytoca KCTC 1686 chromosome, complete genomeLigB family dioxygenase1e-1997.1
NC_015593:2103815:210816621081662108996831Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeExtradiol ring-cleavage dioxygenase class III protein subunit B3e-1789
NC_014815:2055286:207626220762622077107846Micromonospora sp. L5 chromosome, complete genomeextradiol ring-cleavage dioxygenase class iii protein subunit b1e-1686.7