Pre_GI: BLASTP Hits

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Query: NC_009664:1434974:1457272 Kineococcus radiotolerans SRS30216, complete genome

Start: 1457272, End: 1457886, Length: 615

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008268:442657:443606443606444277672Rhodococcus sp. RHA1, complete genomeprobable tetracycline repressor protein2e-1065.9
NC_008268:442657:456425456425457084660Rhodococcus sp. RHA1, complete genomeprobable tetracycline repressor protein2e-1065.9
NC_016111:986936:100046210004621001124663Streptomyces cattleya NRRL 8057, complete genomeTetR-family transcriptional regulator2e-1065.5
NC_009664:1434974:145201714520171452733717Kineococcus radiotolerans SRS30216, complete genometranscriptional regulator, TetR family2e-1065.5
NC_012803:1094679:111035611103561111048693Micrococcus luteus NCTC 2665, complete genometranscriptional regulator, tetR family2e-0962.8
NC_014815:6576983:658020065802006580892693Micromonospora sp. L5 chromosome, complete genomeregulatory protein tetr3e-0962
NC_014221:1518583:152696715269671527650684Truepera radiovictrix DSM 17093 chromosome, complete genometranscriptional regulator, TetR family3e-0961.6
NC_003888:8594500:861164386116438612263621Streptomyces coelicolor A3(2), complete genometranscriptional regulator6e-0960.8
NC_017904:1831071:183107118310711831727657Mycobacterium sp. MOTT36Y chromosome, complete genomeregulatory protein TetR6e-0960.8
NC_013757:21245:245362453625210675Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, TetR family3e-0858.5
NC_010397:4387500:439838343983834399102720Mycobacterium abscessus chromosome Chromosome, complete sequencePutative transcriptional regulator, TetR family4e-0858.2
NC_015434:2683631:270247427024742703091618Verrucosispora maris AB-18-032 chromosome, complete genomeTetR family transcriptional regulator6e-0857.4
NC_013929:5850599:586537458653745866114741Streptomyces scabiei 87.22 chromosome, complete genomeTetR family transcriptional regulator7e-0857.4
NC_008596:3404832:340867134086713409429759Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, TetR family protein7e-0753.9