Pre_GI: BLASTP Hits

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Query: NC_009664:1434974:1455476 Kineococcus radiotolerans SRS30216, complete genome

Start: 1455476, End: 1456168, Length: 693

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015435:825853:825853825853826512660Metallosphaera cuprina Ar-4 chromosome, complete genomebifunctional urease subunit gamma/beta7e-25114
NC_013406:3329791:334865933486593349303645Paenibacillus sp. Y412MC10 chromosome, complete genomeurease subunit gamma9e-24110
NC_017192:1063955:107470110747011075378678Arcobacter sp. L, complete genomeurease beta and gamma subunits4e-23108
NC_017275:985516:988879988879989535657Sulfolobus islandicus HVE10/4 chromosome, complete genomebifunctional urease subunit gamma/beta8e-23107
NC_012988:4292815:432159943215994322306708Methylobacterium extorquens DM4, complete genomeurease subunits gamma/beta2e-21102
NC_014555:47372:692826928269998717Helicobacter pylori PeCan4 chromosome, complete genomeurease subunit alpha3e-2098.6
NC_000915:53715:772407724077956717Helicobacter pylori 26695, complete genomeurease alpha subunit (ureA) (urea amidohydrolase)3e-2098.6
NC_014560:53750:778247782478540717Helicobacter pylori SJM180 chromosome, complete genomeurease subunit alpha3e-2098.6
NC_018939:53715:772407724077956717Helicobacter pylori 26695 chromosome, complete genomeurease subunit alpha3e-2098.6
NC_012973:49208:715637156372279717Helicobacter pylori B38 chromosome, complete genomeurease subunit alpha9e-2097.1
NC_012704:947409:953431953431953736306Corynebacterium kroppenstedtii DSM 44385, complete genomeurease, gamma subunit7e-1787.4
NC_014909:589677:596747596747597049303Candidatus Blochmannia vafer str. BVAF chromosome, complete genomeurease subunit gamma2e-1685.9
NC_007510:913411:933743933743934045303Burkholderia sp. 383 chromosome 1, complete sequenceUrease, gamma subunit3e-1582
NC_013209:2536500:254356525435652543867303Acetobacter pasteurianus IFO 3283-01, complete genomeurease gamma subunit5e-1581.3
NC_017100:2538461:254477225447722545074303Acetobacter pasteurianus IFO 3283-03, complete genomeurease subunit gamma5e-1581.3
NC_017108:2535798:254210925421092542411303Acetobacter pasteurianus IFO 3283-12, complete genomeurease subunit gamma5e-1581.3
NC_017111:2535000:254212725421272542429303Acetobacter pasteurianus IFO 3283-32, complete genomeurease subunit gamma5e-1581.3
NC_017121:2535803:254211425421142542416303Acetobacter pasteurianus IFO 3283-07, complete genomeurease subunit gamma5e-1581.3
NC_017125:2538441:254475225447522545054303Acetobacter pasteurianus IFO 3283-22, complete genomeurease subunit gamma5e-1581.3
NC_017146:2538483:254479425447942545096303Acetobacter pasteurianus IFO 3283-26, complete genomeurease subunit gamma5e-1581.3
NC_003911:1791878:183029418302941830596303Silicibacter pomeroyi DSS-3, complete genomeurease, gamma subunit8e-1580.5
NC_008212:2978786:300186530018653002191327Haloquadratum walsbyi DSM 16790, complete genomeurease, gamma subunit2e-1479.3
NC_008343:2389710:241096924109692411271303Granulibacter bethesdensis CGDNIH1, complete genomeurease gamma subunit2e-1479
NC_007516:2420264:243630224363022436604303Synechococcus sp. CC9605, complete genomeurease, gamma subunit4e-1478.2
NC_014006:924417:946386946386946688303Sphingobium japonicum UT26S chromosome 1, complete genomeurease gamma subunit6e-1477.8
NC_020075:637420:648984648984649286303Candidatus Blochmannia chromaiodes str. 640, complete genomeurease subunit gamma1e-1377
NC_012779:1966205:198464319846431984945303Edwardsiella ictaluri 93-146, complete genomeurease, gamma subunit, putative1e-1376.6
NC_010634:3368000:338999133899913390293303Yersinia pseudotuberculosis PB1/+, complete genomeurease, gamma subunit2e-1375.9
NC_009381:1783886:180474018047401805042303Yersinia pestis Pestoides F chromosome, complete genomeurease subunit gamma2e-1375.9
NC_017154:2999841:301950430195043019806303Yersinia pestis D106004 chromosome, complete genomeurease subunit gamma2e-1375.9
NC_017168:2751027:277069027706902770992303Yersinia pestis A1122 chromosome, complete genomeurease subunit gamma2e-1375.9
NC_017265:3063016:308267930826793082981303Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,urease subunit gamma2e-1375.9
NC_008686:1180388:118295511829551183266312Paracoccus denitrificans PD1222 chromosome 1, complete sequenceurease, gamma subunit3e-1375.1
NC_011886:404661:412662412662412964303Arthrobacter chlorophenolicus A6, complete genomeurease, gamma subunit4e-1375.1
NC_015681:1201926:120807612080761208378303Thermodesulfatator indicus DSM 15286 chromosome, complete genomeurease subunit gamma2e-1272.4
NC_015172:951550:961011961011961313303Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeUrease subunit gamma3e-1272
NC_013894:672840:683344683344683649306Thermocrinis albus DSM 14484 chromosome, complete genomeurease, gamma subunit1e-1170.5
NC_013894:672840:678790678790679095306Thermocrinis albus DSM 14484 chromosome, complete genomeurease, gamma subunit1e-1170.5
AP010958:3853082:386683138668313867133303Escherichia coli O103:H2 str. 12009 DNA, complete genomeurease gamma subunit UreA9e-1270.5
NC_013008:1307392:133514913351491335451303Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeurease subunit gamma9e-1270.5
NC_013353:3853082:386683138668313867133303Escherichia coli O103:H2 str. 12009, complete genomeurease gamma subunit UreA9e-1270.5
NC_015634:2547144:254918825491882549493306Bacillus coagulans 2-6 chromosome, complete genomeurease subunit gamma8e-1270.5
NC_004369:1051013:105549310554931055825333Corynebacterium efficiens YS-314, complete genomeurease gamma subunit2e-1169.7
NC_017506:2993679:301182430118243012126303Marinobacter adhaerens HP15 chromosome, complete genomeurease subunit gamma3e-1168.9
NC_012803:361127:371273371273371575303Micrococcus luteus NCTC 2665, complete genomeurease, gamma subunit3e-1168.9
NC_009142:2725000:273631827363182736887570Saccharopolyspora erythraea NRRL 2338, complete genomeurease beta/gamma subunit4e-1168.6
NC_012559:978419:100146510014651001767303Laribacter hongkongensis HLHK9, complete genomeUrease, gamma subunit2e-1066.2
NC_020302:2116468:212342821234282123730303Corynebacterium halotolerans YIM 70093 = DSM 44683, completeurease subunit gamma3e-1065.5
NC_008212:2978786:299977929997793000159381Haloquadratum walsbyi DSM 16790, complete genomeurease, beta subunit1e-0963.2
NC_007516:2420264:243661524366152436935321Synechococcus sp. CC9605, complete genomeurease, beta subunit1e-0963.2
NC_013353:3853082:386714238671423867462321Escherichia coli O103:H2 str. 12009, complete genomeurease beta subunit UreB4e-0962
NC_013008:1307392:133546013354601335780321Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeurease subunit beta4e-0962
AP010958:3853082:386714238671423867462321Escherichia coli O103:H2 str. 12009 DNA, complete genomeurease beta subunit UreB4e-0962
NC_013209:2536500:254323725432372543545309Acetobacter pasteurianus IFO 3283-01, complete genomeurease beta subunit1e-0860.1
NC_017100:2538461:254444425444442544752309Acetobacter pasteurianus IFO 3283-03, complete genomeurease subunit beta1e-0860.1
NC_017108:2535798:254178125417812542089309Acetobacter pasteurianus IFO 3283-12, complete genomeurease subunit beta1e-0860.1
NC_017111:2535000:254179925417992542107309Acetobacter pasteurianus IFO 3283-32, complete genomeurease subunit beta1e-0860.1
NC_017121:2535803:254178625417862542094309Acetobacter pasteurianus IFO 3283-07, complete genomeurease subunit beta1e-0860.1
NC_017125:2538441:254442425444242544732309Acetobacter pasteurianus IFO 3283-22, complete genomeurease subunit beta1e-0860.1
NC_017146:2538483:254446625444662544774309Acetobacter pasteurianus IFO 3283-26, complete genomeurease subunit beta1e-0860.1
NC_012559:978419:100181910018191002226408Laribacter hongkongensis HLHK9, complete genomeUrease, beta subunit2e-0859.7
NC_014006:924417:946076946076946402327Sphingobium japonicum UT26S chromosome 1, complete genomeurease beta subunit2e-0859.3
NC_007510:913411:933429933429933734306Burkholderia sp. 383 chromosome 1, complete sequenceUrease, beta subunit3e-0858.9
NC_012704:947409:9499819499819521732193Corynebacterium kroppenstedtii DSM 44385, complete genomeurease, alpha subunit/beta subunit3e-0858.9
NC_009437:2579161:261789526178952618170276Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeurease, gamma subunit9e-0857.4
NC_013894:672840:688541688541688900360Thermocrinis albus DSM 14484 chromosome, complete genomeurease, beta subunit1e-0757
NC_003911:1791878:183077318307731831078306Silicibacter pomeroyi DSS-3, complete genomeurease, beta subunit2e-0756.6
NC_009381:1783886:180425318042531804780528Yersinia pestis Pestoides F chromosome, complete genomeurease subunit beta1e-0756.6
NC_015681:1201926:120769712076971208065369Thermodesulfatator indicus DSM 15286 chromosome, complete genomeurease subunit beta1e-0756.6
NC_017168:2751027:277020327702032770679477Yersinia pestis A1122 chromosome, complete genomeurease subunit beta2e-0756.2
NC_017154:2999841:301901730190173019493477Yersinia pestis D106004 chromosome, complete genomeurease (urea amidohydrolase) beta subunit2e-0756.2
NC_010634:3368000:338950433895043389980477Yersinia pseudotuberculosis PB1/+, complete genomeurease, beta subunit2e-0756.2
NC_017265:3063016:308219230821923082626435Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,urease subunit beta2e-0756.2
NC_012988:1777618:177980817798081780110303Methylobacterium extorquens DM4, complete genomeurease subunit gamma2e-0756.2
NC_012988:1777618:177937317793731779783411Methylobacterium extorquens DM4, complete genomeurease subunit beta2e-0755.8
NC_012779:1966205:198417419841741984590417Edwardsiella ictaluri 93-146, complete genomeurease, beta subunit, putative2e-0755.8
NC_008686:1180388:118207611820761182393318Paracoccus denitrificans PD1222 chromosome 1, complete sequenceurease, beta subunit1e-0653.5
NC_017506:2993679:301149630114963011813318Marinobacter adhaerens HP15 chromosome, complete genomeurease subunit beta2e-0652.8
NC_008343:2389710:241129124112912411596306Granulibacter bethesdensis CGDNIH1, complete genomeurease beta subunit4e-0652
NC_012803:361127:371596371596372030435Micrococcus luteus NCTC 2665, complete genomeurease, beta subunit1e-0550.4