Pre_GI: BLASTP Hits

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Query: NC_009664:1434974:1452017 Kineococcus radiotolerans SRS30216, complete genome

Start: 1452017, End: 1452733, Length: 717

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010397:4387500:439838343983834399102720Mycobacterium abscessus chromosome Chromosome, complete sequencePutative transcriptional regulator, TetR family5e-30131
NC_012803:1094679:111035611103561111048693Micrococcus luteus NCTC 2665, complete genometranscriptional regulator, tetR family4e-27121
NC_014815:6576983:658020065802006580892693Micromonospora sp. L5 chromosome, complete genomeregulatory protein tetr1e-21103
NC_016111:986936:100046210004621001124663Streptomyces cattleya NRRL 8057, complete genomeTetR-family transcriptional regulator1e-1893.6
NC_003888:8613848:861831386183138618951639Streptomyces coelicolor A3(2), complete genomeTetR-family transcriptional regulator5e-1374.7
NC_013595:41245:412454124541949705Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, TetR family4e-1168.6
NC_009664:1434974:145727214572721457886615Kineococcus radiotolerans SRS30216, complete genomeTetracyclin repressor domain protein1e-1067
NC_019673:8161242:816215981621598162875717Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, TetR family2e-0962.8
NC_013595:6978614:699085969908596991533675Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, TetR family2e-0962.8
NC_013757:3717500:373045537304553731231777Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, TetR family3e-0962
NC_003155:622993:634378634378635061684Streptomyces avermitilis MA-4680, complete genomeTetR-family transcriptional regulator3e-0962
NC_013929:5850599:586537458653745866114741Streptomyces scabiei 87.22 chromosome, complete genomeTetR family transcriptional regulator4e-0961.6
NC_008268:442657:456425456425457084660Rhodococcus sp. RHA1, complete genomeprobable tetracycline repressor protein3e-0858.9
NC_015434:2683631:270247427024742703091618Verrucosispora maris AB-18-032 chromosome, complete genomeTetR family transcriptional regulator4e-0858.5
NC_014221:1518583:152696715269671527650684Truepera radiovictrix DSM 17093 chromosome, complete genometranscriptional regulator, TetR family8e-0857.4
NC_017904:1831071:183107118310711831727657Mycobacterium sp. MOTT36Y chromosome, complete genomeregulatory protein TetR1e-0757
NC_013757:21245:245362453625210675Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, TetR family2e-0756.2
NC_003888:8594500:861164386116438612263621Streptomyces coelicolor A3(2), complete genometranscriptional regulator4e-0755.1
NC_002944:99000:104739104739105512774Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein7e-0754.3
NC_015953:2603526:261081926108192611727909Streptomyces sp. SirexAA-E chromosome, complete genomeGntR family transcriptional regulator1e-0653.5
NC_008268:442657:443606443606444277672Rhodococcus sp. RHA1, complete genomeprobable tetracycline repressor protein2e-0653.1
NC_014623:4683671:468649946864994687191693Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeTetR family transcriptional regulator3e-0652.4
NC_013947:1537275:154742115474211548170750Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, TetR family4e-0652
NC_008596:3404832:340867134086713409429759Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, TetR family protein6e-0651.2