Pre_GI: BLASTP Hits

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Query: NC_009617:4805413:4808866 Clostridium beijerinckii NCIMB 8052 chromosome, complete genome

Start: 4808866, End: 4809417, Length: 552

Host Lineage: Clostridium beijerinckii; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: Solvent-producing bacterium. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. There are also species that can fix molecular nitrogen and thus are important participants in biological turnaround of nitrogen compounds in nature. This species is used to produce industrial solvents.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004557:1553000:155369415536941554401708Clostridium tetani E88, complete genomeputative transcriptional regulatory protein4e-51200
NC_007907:4956500:498991149899114990465555Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-46185
NC_009617:1487110:149075414907541491308555Clostridium beijerinckii NCIMB 8052 chromosome, complete genomehelix-turn-helix domain-containing protein6e-35146
NC_014328:2518081:253808325380832538637555Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein2e-33141
NC_009089:1283000:131939013193901319941552Clostridium difficile 630, complete genomeputative transcriptional regulator6e-33140
NC_014624:1369642:137228713722871372838552Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein5e-29127
NC_015567:2328782:233007923300792330642564Serratia sp. AS9 chromosome, complete genomehelix-turn-helix domain-containing protein2e-27122
NC_015566:2328771:233006823300682330631564Serratia sp. AS12 chromosome, complete genomehelix-turn-helix domain-containing protein2e-27122
NC_012660:4149487:415199341519934152619627Pseudomonas fluorescens SBW25 chromosome, complete genomeputative DNA binding protein2e-24111
NC_014532:1481787:150309715030971503672576Halomonas elongata DSM 2581, complete genomehypothetical protein7e-23106
NC_013406:3650300:365837636583763658936561Paenibacillus sp. Y412MC10 chromosome, complete genomeXRE family transcriptional regulator6e-21100
NC_008800:2127918:215057121505712151032462Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative DNA-binding protein3e-2098.2
NC_007650:2901751:295029503558609Burkholderia thailandensis E264 chromosome II, complete sequenceDNA-binding protein4e-1890.9
NC_020126:7285452:729938772993877299959573Myxococcus stipitatus DSM 14675, complete genomeXRE family transcriptional regulator1e-1789.4
NC_009075:3113393:294829483556609Burkholderia pseudomallei 668 chromosome II, complete sequenceDNA-binding protein5e-1787.4
NC_009078:3087759:294829483556609Burkholderia pseudomallei 1106a chromosome II, complete sequenceDNA-binding/cupin domain protein5e-1787.4
NC_007435:1825741:184202518420251842633609Burkholderia pseudomallei 1710b chromosome II, complete sequenceputative DNA-binding protein5e-1787.4
NC_006349:2311817:408640864694609Burkholderia mallei ATCC 23344 chromosome 2, complete sequenceDNA-binding protein2e-1685.5
NC_008784:1151305:116827711682771168885609Burkholderia mallei SAVP1 chromosome I, complete sequenceDNA-binding protein2e-1685.5
NC_008835:1483237:149940114994011500009609Burkholderia mallei NCTC 10229 chromosome I, complete sequenceDNA-binding protein2e-1685.5
NC_006351:3159630:294629463554609Burkholderia pseudomallei K96243 chromosome 2, complete sequenceDNA-binding protein2e-1685.5
NC_009079:2339756:408640864694609Burkholderia mallei NCTC 10247 chromosome I, complete sequenceDNA-binding protein2e-1685.5
NC_012108:946314:962372962372962944573Desulfobacterium autotrophicum HRM2, complete genometranscriptional regulator (Cro/CI family protein)5e-1684
NC_019673:3253650:325551432555143256071558Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, XRE family7e-1580.1
NC_014118:2417838:242979424297942430366573Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, XRE family2e-1479
NC_020064:79422:976759767598283609Serratia marcescens FGI94, complete genomeputative transcriptional regulator2e-1478.6
NC_011283:1178500:118395211839521184521570Klebsiella pneumoniae 342 chromosome, complete genomeDNA-binding protein3e-1477.8
NC_013510:747042:762300762300762866567Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family6e-1477
NC_014328:1286407:130205613020561302601546Clostridium ljungdahlii ATCC 49587 chromosome, complete genometranscriptional regulator1e-1376.3
NC_014960:1697818:171901417190141719634621Anaerolinea thermophila UNI-1, complete genomehypothetical protein2e-1375.9
NC_006510:2910000:291967829196782920220543Geobacillus kaustophilus HTA426, complete genomehypothetical protein2e-1375.5
NC_006905:1766000:177105217710521771654603Salmonella enterica subsp. enterica serovar Choleraesuis strputative transcriptional regulator3e-1375.1
NC_008148:2498000:252032625203262520988663Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, XRE family with cupin sensor4e-1374.3
NC_009953:2808288:281348928134892814016528Salinispora arenicola CNS-205 chromosome, complete genomeXRE family transcriptional regulator5e-1373.9
NC_011080:1750000:175424417542441754846603Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator, Cro/CI family5e-1373.9
NC_003197:1753663:175788917578891758491603Salmonella typhimurium LT2, complete genomeputative transcriptional regulator7e-1373.6
NC_016810:1709695:171474217147421715344603Salmonella enterica subsp. enterica serovar Typhimurium strDNA-binding protein7e-1373.6
NC_016856:1763640:176786617678661768468603Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative transcriptional regulator7e-1373.6
NC_016857:1709695:171474217147421715344603Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative transcriptional regulator7e-1373.6
NC_016860:1752000:175558017555801756182603Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator7e-1373.6
NC_016863:1711832:171605817160581716660603Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transcriptional regulator7e-1373.6
NC_017046:1709578:171462517146251715227603Salmonella enterica subsp. enterica serovar Typhimurium str. 798DNA-binding protein7e-1373.6
NC_003198:1336894:135202213520221352624603Salmonella enterica subsp. enterica serovar Typhi str. CT18,conserved hypothetical DNA-binding protein8e-1373.2
NC_004631:1623511:162855816285581629160603Salmonella enterica subsp. enterica serovar Typhi Ty2, completeconserved hypothetical DNA-binding protein8e-1373.2
NC_006511:1273162:128828112882811288883603Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCconserved hypothetical DNA-binding protein2e-1272
NC_011147:1267005:128212412821241282726603Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-1272
NC_014121:4043198:405680640568064057378573Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein2e-1271.6
NC_013947:4363250:437654343765434377166624Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, XRE family2e-1271.6
NC_011094:1726000:173106917310691731671603Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional regulator, Cro/CI family protein3e-1271.2
NC_011149:1429523:144464314446431445245603Salmonella enterica subsp. enterica serovar Agona str. SL483,transcriptional regulator, Cro/CI family5e-1270.5
NC_014121:4577324:458073445807344581336603Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein8e-1270.1
NC_006932:1795500:1799556179955618015081953Brucella abortus biovar 1 str. 9-941 chromosome I, completetranscriptional regulator, Cro/CI family1e-1169.7
NC_010103:1777000:1780871178087117828231953Brucella canis ATCC 23365 chromosome I, complete sequencehypothetical protein1e-1169.7
NC_010742:1794000:1797845179784517997971953Brucella abortus S19 chromosome 1, complete sequencetranscriptional regulator, Cro/CI family1e-1169.7
NC_010167:1287000:1290803129080312927551953Brucella suis ATCC 23445 chromosome II, complete sequencehypothetical protein1e-1169.7
NC_010067:3538169:353816935381693538783615Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-1169.7
NC_007618:1792500:1796708179670817986361929Brucella melitensis biovar Abortus 2308 chromosome I, completeSAM (and some other nucleotide) binding motif:Helix-turn-helix motif2e-1168.9
NC_015857:1809500:1813481181348118154091929Brucella pinnipedialis B2/94 chromosome chromosome 1, completeCro/CI family transcriptional regulator2e-1168.9
NC_004310:1777721:1782720178272017846481929Brucella suis 1330 chromosome I, complete sequencetranscriptional regulator, Cro/CI family2e-1168.9
NC_016048:2907702:293945829394582940024567Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein2e-1168.9
NC_007948:4558000:460677746067774607370594Polaromonas sp. JS666, complete genometranscriptional regulator, XRE family3e-1168.2
NC_012032:2925000:293613129361312936766636Chloroflexus sp. Y-400-fl, complete genometranscriptional regulator, XRE family3e-1168.2
NC_010175:2925084:294094629409462941581636Chloroflexus aurantiacus J-10-fl, complete genomeCupin 2 conserved barrel domain protein3e-1168.2
NC_015563:3979500:399881739988173999386570Delftia sp. Cs1-4 chromosome, complete genomehelix-turn-helix domain-containing protein6e-1167
NC_013939:1535071:155165715516571552193537Deferribacter desulfuricans SSM1, complete genomeXRE family transcriptional regulator7e-1167
NC_016002:2652500:265727326572732657857585Pseudogulbenkiania sp. NH8B, complete genomeXRE family transcriptional regulator9e-1166.6
NC_014258:42262:668136681367391579Pantoea vagans C9-1 plasmid pPag3, complete sequenceputative HTH-type transcriptional regulatory protein8e-1166.6
NC_003296:1665569:167175816717581672375618Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE DNA-BINDING TRANSCRIPTIONAL REGULATORY TRANSCRIPTION REGULATOR PROTEIN8e-1166.6
NC_003296:1696958:170194817019481702565618Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE TRANSCRIPTION REGULATOR PROTEIN8e-1166.6
NC_020063:4653422:466162746616274662175549Enterobacteriaceae bacterium strain FGI 57, complete genomeputative transcriptional regulator1e-1066.2
NC_015138:693865:707847707847708416570Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehelix-turn-helix domain-containing protein1e-1066.2
NC_016830:3230939:323805032380503238652603Pseudomonas fluorescens F113 chromosome, complete genomecro ci family transcriptional regulator3e-1065.1
NC_015379:3736500:375449337544933755095603Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, Xre family3e-1065.1
NC_020064:2728569:273358927335892734137549Serratia marcescens FGI94, complete genomeputative transcriptional regulator8e-1063.5
NC_016818:3736213:375836837583683758922555Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeputative transcriptional regulator7e-1063.5
NC_020063:3690308:373506937350693735671603Enterobacteriaceae bacterium strain FGI 57, complete genomeputative transcriptional regulator2e-0962.4
NC_013235:464049:465497465497466090594Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, XRE family2e-0962.4
NC_016816:4129299:415585641558564156458603Pantoea ananatis LMG 5342, complete genomeB3/4 domain-containing protein2e-0962
NC_016818:3887000:391853439185343919082549Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeputative transcriptional regulator2e-0962
NC_014640:5047201:504847650484765049030555Achromobacter xylosoxidans A8 chromosome, complete genomehypothetical protein2e-0962
NC_015434:3507059:352202535220253522603579Verrucosispora maris AB-18-032 chromosome, complete genomeXRE family transcriptional regulator3e-0961.6
NC_014654:2311818:232518923251892325725537Halanaerobium sp. 'sapolanicus' chromosome, complete genomeCupin 2 conserved barrel domain protein4e-0961.2
NC_008701:391216:3967843967843983341551Pyrobaculum islandicum DSM 4184, complete genometranscriptional regulator, XRE family3e-0961.2
NC_020134:1328302:133941313394131339952540Clostridium stercorarium subsp. stercorarium DSM 8532, completeputative DNA-binding protein3e-0961.2
NC_016025:552000:561697561697562284588Candidatus Chloracidobacterium thermophilum B chromosome chromosomeputative transcriptional regulator4e-0960.8
NC_011757:517000:548476548476549072597Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, XRE family6e-0960.5
NC_015500:900807:900807900807901394588Treponema brennaborense DSM 12168 chromosome, complete genomehelix-turn-helix domain protein9e-0959.7
NC_014831:1843835:186641118664111867175765Thermaerobacter marianensis DSM 12885 chromosome, complete genomeCupin 2 conserved barrel domain protein1e-0859.3
NC_016885:417661:4347374347374362871551Pyrobaculum oguniense TE7 chromosome, complete genomeputative transcriptional regulator2e-0858.9
NC_015376:3320818:335258433525843353144561Burkholderia gladioli BSR3 chromosome chromosome 2, completetranscriptional regulator, XRE family3e-0858.2
NC_009614:821247:823492823492824046555Bacteroides vulgatus ATCC 8482 chromosome, complete genometranscriptional regulator8e-0856.6
NC_014532:2108897:211584221158422116432591Halomonas elongata DSM 2581, complete genomeprobable transcriptional regulator1e-0756.2
NC_014532:3596097:361884336188433619433591Halomonas elongata DSM 2581, complete genomeprobable transcriptional regulator1e-0756.2
NC_007907:4859735:487593148759314876476546Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-0756.2
NC_004461:779000:788650788650789189540Staphylococcus epidermidis ATCC 12228, complete genomehypothetical protein1e-0756.2
NC_016645:279232:3038763038763054201545Pyrobaculum sp. 1860 chromosome, complete genometranscriptional regulator, XRE family2e-0755.8
NC_012791:2386000:239303923930392393611573Variovorax paradoxus S110 chromosome 1, complete genometranscriptional regulator, XRE family1e-0755.8
NC_007907:4859735:487526948752694875916648Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-0755.5
NC_013729:2258582:225858222585822259178597Kribbella flavida DSM 17836, complete genometranscriptional regulator, XRE family2e-0755.1
NC_017273:352150:357368357368357946579Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, completecupin3e-0754.7
NC_012522:7837071:785901578590157859641627Rhodococcus opacus B4, complete genomehypothetical protein5e-0754.3
NC_008253:1228485:123373712337371234321585Escherichia coli 536, complete genomeprobable transcriptional regulator5e-0753.9
NC_011745:1287714:129306912930691293653585Escherichia coli ED1a chromosome, complete genomeputative transcriptional regulator5e-0753.9
NC_014010:1850500:188064418806441881270627Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeDNA-binding protein5e-0753.9
NC_013941:733286:745237745237745821585Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeHelix-turn-helix domain protein7e-0753.5
NC_016816:4129299:414295041429504143534585Pantoea ananatis LMG 5342, complete genomeputative transcriptional regulator7e-0753.5
UCMB5137:1:101211012110666546Bacillus atrophaeus UCMB-5137unknown1e-0652.8
NC_012808:4137000:413802541380254138288264Methylobacterium extorquens AM1, complete genomehypothetical protein1e-0652.8
NC_013716:357928:389831389831390388558Citrobacter rodentium ICC168, complete genometranscriptional regulator of the polyamine metabolism genes1e-0652.8
NC_010725:4035397:407959340795934079832240Methylobacterium populi BJ001, complete genometranscriptional regulator, XRE family1e-0652.4
NC_004129:2609189:261369426136942614242549Pseudomonas fluorescens Pf-5, complete genomeDNA-binding protein2e-0652
NC_010002:3509506:351042335104233510992570Delftia acidovorans SPH-1, complete genometranscriptional regulator, XRE family2e-0652
NC_006350:1084930:108965110896511090214564Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative DNA-binding protein2e-0652
NC_016048:3856665:387693238769323877567636Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein4e-0651.2
NC_019973:5797000:580159558015955801813219Mesorhizobium australicum WSM2073, complete genomeputative transcriptional regulator5e-0650.8
NC_014923:5868000:587263558726355872853219Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completehelix-turn-helix domain protein5e-0650.8
NC_015675:6423000:642730664273066427524219Mesorhizobium opportunistum WSM2075 chromosome, complete genomeXRE family transcriptional regulator5e-0650.8
NC_003047:536151:546632546632546901270Sinorhizobium meliloti 1021, complete genomeHYPOTHETICAL TRANSCRIPTION REGULATOR PROTEIN6e-0650.4