Pre_GI: BLASTP Hits

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Query: NC_009617:163466:173671 Clostridium beijerinckii NCIMB 8052 chromosome, complete genome

Start: 173671, End: 174342, Length: 672

Host Lineage: Clostridium beijerinckii; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: Solvent-producing bacterium. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. There are also species that can fix molecular nitrogen and thus are important participants in biological turnaround of nitrogen compounds in nature. This species is used to produce industrial solvents.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020291:166500:175261175261175881621Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeRNA polymerase sigma-H factor SigH5e-109393
NC_010723:223935:232933232933233553621Clostridium botulinum E3 str. Alaska E43, complete genomeRNA polymerase sigma-H factor5e-99360
NC_010674:222016:231001231001231621621Clostridium botulinum B str. Eklund 17B, complete genomeRNA polymerase sigma-H factor1e-98358
NC_010516:3759136:379637737963773797018642Clostridium botulinum B1 str. Okra, complete genomeRNA polymerase sigma-H factor1e-88325
NC_010520:3788702:382597838259783826619642Clostridium botulinum A3 str. Loch Maree, complete genomeRNA polymerase sigma-H factor1e-88325
NC_012563:3956500:399330639933063993947642Clostridium botulinum A2 str. Kyoto, complete genomeRNA polymerase sigma-H factor1e-88325
NC_009698:3553365:359847835984783599119642Clostridium botulinum A str. Hall chromosome, complete genomeRNA polymerase factor sigma-701e-88325
NC_009495:3688138:372538037253803725952573Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeRNA polymerase factor sigma-701e-85315
NC_008262:2598920:263694326369432637590648Clostridium perfringens SM101, complete genomeRNA polymerase sigma-H factor2e-85315
NC_008593:196257:216937216937217596660Clostridium novyi NT, complete genomeRNA polymerase sigma-H factor3e-85314
NC_021182:4557608:459439445943944595038645Clostridium pasteurianum BC1, complete genomeRNA polymerase sigma-H factor2e-84311
NC_015425:198315:221558221558222268711Clostridium botulinum BKT015925 chromosome, complete genomeRNA polymerase sigma-H factor5e-84310
NC_014393:4482896:452051745205174521170654Clostridium cellulovorans 743B chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-82305
NC_015687:3252233:328977932897793290417639Clostridium acetobutylicum DSM 1731 chromosome, complete genomeRNA polymerase factor sigma-702e-82305
NC_017295:3250451:328740932874093288047639Clostridium acetobutylicum EA 2018 chromosome, complete genomeRNA polymerase factor sigma-702e-82305
NC_003030:3251941:328815232881523288790639Clostridium acetobutylicum ATCC 824, complete genomeRNA polymerase sigma-70 factor4e-82304
NC_010424:214640:219240219240219890651Candidatus Desulforudis audaxviator MP104C, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-78291
NC_009633:4563877:459642045964204597061642Alkaliphilus metalliredigens QYMF chromosome, complete genomeRNA polymerase factor sigma-707e-78290
NC_013216:293571:293571293571294215645Desulfotomaculum acetoxidans DSM 771, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-78289
NC_014220:2265882:227790422779042278557654Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-76284
NC_010718:193231:199476199476200117642Natranaerobius thermophilus JW/NM-WN-LF, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-76283
NC_017208:108134:111911111911112570660Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeRNA polymerase factor sigma-706e-76283
NC_014171:109280:109860109860110519660Bacillus thuringiensis BMB171 chromosome, complete genomeRNA polymerase factor sigma-706e-76283
NC_015958:2251619:231219523121952312839645Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit SigH6e-76283
NC_019970:336472:364927364927365571645Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeRNA polymerase sigma-H factor2e-75282
NC_014410:403776:411426411426412070645Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,RNA polymerase, sigma-24 subunit, ECF subfamily1e-75282
NC_014964:388458:396348396348396992645Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeRNA polymerase sigma-H factor1e-75282
NC_010320:881351:886863886863887507645Thermoanaerobacter sp. X514 chromosome, complete genomeRNA polymerase factor sigma-701e-75282
NC_010321:393000:400932400932401576645Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeRNA polymerase factor sigma-701e-75282
NC_015555:327562:335253335253335897645Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeRNA polymerase, sigma-24 subunit, SigH, ECF subfamily2e-75281
NC_010382:4479464:448226744822674482914648Lysinibacillus sphaericus C3-41, complete genomeRNA polymerase sigma-H factor (sigma-30)2e-74278
NC_004193:119737:122942122942123595654Oceanobacillus iheyensis HTE831, complete genomeRNA polymerase sigma-70 factor8e-70263
NC_019978:178277:179975179975180622648Halobacteroides halobius DSM 5150, complete genomeRNA polymerase sigma-H factor1e-68259
NC_015913:1491393:152024115202411520882642Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomeRNA polymerase factor sigma-703e-68258
NC_017294:1457262:148663114866311487272642Candidatus Arthromitus sp. SFB-mouse-Yit, complete genomeRNA polymerase sigma-H factor3e-68258
NC_014652:757381:775730775730776464735Caldicellulosiruptor hydrothermalis 108 chromosome, completeRNA polymerase, sigma-24 subunit, ecf subfamily3e-68258
NC_014392:1935130:195037219503721951106735Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-68257
NC_013316:81969:867408674087402663Clostridium difficile R20291, complete genomeRNA polymerase sigma-H factor2e-66252
NC_015520:2280643:230498623049862305636651Mahella australiensis 50-1 BON chromosome, complete genomeRNA polymerase sigma-30 subunit SigH9e-60229
NC_019978:2260395:228220222822022282888687Halobacteroides halobius DSM 5150, complete genomeRNA polymerase sigma factor, sigma-70 family5e-41167
NC_015737:2146953:214637521463752146956582Clostridium sp. SY8519, complete genomeDNA-directed RNA polymerase specialized sigma subunit1e-34146
NC_013207:19154:401344013440763630Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446RNA polymerase, sigma-24 subunit, ECF subfamily2e-27122
NC_013205:576583:602372602372603001630Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,RNA polymerase, sigma-24 subunit, ECF subfamily4e-27121
NC_017167:1648913:171892317189231719552630Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1ECF subfamily RNA polymerase sigma-24 subunit2e-25115
NC_017167:2298962:232631423263142326943630Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1ECF subfamily RNA polymerase sigma-24 subunit2e-25115
NC_016629:3396500:3420075342007534218591785Desulfovibrio africanus str. Walvis Bay chromosome, completeRpoD subfamily RNA polymerase sigma-70 subunit4e-0961.6
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome1e-0859.7
NC_014219:567033:568900568900569706807Bacillus selenitireducens MLS10 chromosome, complete genometranscriptional regulator, LuxR family2e-0859.3
NC_012912:1200000:122636512263651226940576Dickeya zeae Ech1591, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0858.5
NC_014551:483773:484547484547485335789Bacillus amyloliquefaciens DSM 7, complete genomeRNA polymerase sigma-37 factor (sigma(B))4e-0858.2
NC_017188:461177:461951461951462739789Bacillus amyloliquefaciens TA208 chromosome, complete genomeRNA polymerase sigma factor SigB4e-0858.2
NC_017190:466236:466684466684467472789Bacillus amyloliquefaciens LL3 chromosome, complete genomeRNA polymerase sigma-37 factor (sigma(B))4e-0858.2
NC_017191:467207:467981467981468769789Bacillus amyloliquefaciens XH7 chromosome, complete genomeRNA polymerase sigma factor SigB4e-0858.2
NC_020410:495184:495958495958496746789Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeRNA polymerase sigma-B factor6e-0857.8
NC_009725:496443:497217497217498005789Bacillus amyloliquefaciens FZB42, complete genomeSigB6e-0857.8
NC_019842:484933:485381485381486169789Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,RNA polymerase sigma factor SigB6e-0857.8
NC_004193:375416:655820655820656611792Oceanobacillus iheyensis HTE831, complete genomesigma factor B2e-0756.2
NC_012673:2023297:202719120271912027991801Exiguobacterium sp. AT1b, complete genomeRNA polymerase, sigma 28 subunit, Sig B/F/G subfamily2e-0755.8
NC_018704:347948:352252352252353040789Amphibacillus xylanus NBRC 15112, complete genomeRNA polymerase sigma-B factor2e-0755.8
NC_006322:2592176:2607296260729626084171122Bacillus licheniformis ATCC 14580, complete genomeRNA polymerase sigma factor2e-0755.8
NC_006582:883922:886206886206886991786Bacillus clausii KSM-K16, complete genomesigma factor B3e-0755.5
NC_009454:1246393:126549412654941266273780Pelotomaculum thermopropionicum SI, complete genomeDNA-directed RNA polymerase specialized sigma subunit3e-0755.5
NC_006270:2591317:2606437260643726075581122Bacillus licheniformis ATCC 14580, complete genomeRNA polymerase sigma factor3e-0755.5
NC_012880:3241886:326005132600513260626576Dickeya dadantii Ech703, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0755.5
NC_021184:3149000:315104331510433151618576Desulfotomaculum gibsoniae DSM 7213, complete genomeRNA polymerase sigma factor, sigma-70 family4e-0755.1
NC_011566:3994239:399821439982143998792579Shewanella piezotolerans WP3, complete genomeRNA polymerse sigmaE factor4e-0754.7
NC_014652:420457:466485466485467105621Caldicellulosiruptor hydrothermalis 108 chromosome, completeRNA polymerase sigma factor, sigma-70 family5e-0754.7
NC_016047:637778:639621639621640409789Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeRNA polymerase sigma-B factor7e-0754.3
NC_008346:584305:613841613841614575735Syntrophomonas wolfei subsp. wolfei str. Goettingen, completesigma 28 (flagella/sporulation)8e-0753.9
NC_014479:509919:510693510693511481789Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeRNA polymerase sigma factor SigB8e-0753.9
NC_016510:871000:877846877846878709864Flavobacterium columnare ATCC 49512 chromosome, complete genomeRpoD family RNA polymerase sigma factor8e-0753.9
NC_014976:2735423:273726627372662738054789Bacillus subtilis BSn5 chromosome, complete genomeRNA polymerase sigma factor SigB1e-0653.5
NC_000964:521975:522417522417523211795Bacillus subtilis subsp. subtilis str. 168, complete genomesigma factor B1e-0653.5
NC_015164:325212:344338344338345198861Bacteroides salanitronis DSM 18170 chromosome, complete genomeRNA polymerase, sigma 70 subunit, RpoD subfamily1e-0653.1
NC_014657:914071:916231916231917052822Caldicellulosiruptor owensensis OL chromosome, complete genomeRNA polymerase, sigma 70 subunit, rpod subfamily2e-0653.1
NC_019896:3491000:351722135172213518015795Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeRNA polymerase sigma factor SigB2e-0652.8
NC_012034:2555447:256947025694702570102633Anaerocellum thermophilum DSM 6725, complete genomeputative RNA polymerase, sigma 70 family subunit2e-0652.8
NC_015496:2155816:215908021590802159943864Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeRNA polymerase, sigma 70 subunit, RpoD subfamily2e-0652.4
NC_019748:4129500:4144777414477741460271251Stanieria cyanosphaera PCC 7437, complete genomeRNA polymerase, sigma subunit, RpsC/SigC2e-0652.4
NC_003228:3212500:321592932159293216789861Bacteroides fragilis NCTC 9343, complete genomeputative sigma factor A3e-0652
NC_008054:1030994:1053267105326710543851119Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeRNA polymerase sigma factor RpoD (Sigma-A)3e-0652
NC_007298:2170181:217566021756602176259600Dechloromonas aromatica RCB, complete genomeRNA polymerase sigma-70 factor3e-0652
NC_019842:2575000:257786225778622578509648Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,sporulation sigma factor SigK3e-0652
NC_009922:2721343:273475927347592735331573Alkaliphilus oremlandii OhILAs, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0651.6
NC_009633:760872:765332765332765904573Alkaliphilus metalliredigens QYMF chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor4e-0651.6
NC_013515:550464:5673445673445684831140Streptobacillus moniliformis DSM 12112, complete genomeRNA polymerase, sigma 70 subunit, RpoD subfamily4e-0651.6
NC_009614:3476000:349491834949183495778861Bacteroides vulgatus ATCC 8482 chromosome, complete genomeRNA polymerase sigma factor rpoD4e-0651.6
NC_014551:2510000:251515725151572515879723Bacillus amyloliquefaciens DSM 7, complete genomeRNA polymerase sporulation-specific sigma-K factor precursor (Sigma-27) (C-terminal fragment)6e-0651.2
NC_020272:1384525:140054414005441401266723Bacillus amyloliquefaciens IT-45, complete genomesporulation sigma factor SigK6e-0651.2
NC_007413:1405817:1426867142686714281171251Anabaena variabilis ATCC 29413, complete genomeRNA polymerase sigma-like factor5e-0651.2
NC_009725:2517428:252185025218502522572723Bacillus amyloliquefaciens FZB42, complete genomeSpoIIIC5e-0651.2
NC_020410:2509057:251185125118512512573723Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeRNA polymerase sigma-K factor5e-0651.2
NC_017188:2512357:251601825160182516743726Bacillus amyloliquefaciens TA208 chromosome, complete genomesporulation sigma factor SigK5e-0651.2
NC_017191:2514401:251805925180592518787729Bacillus amyloliquefaciens XH7 chromosome, complete genomesporulation sigma factor SigK5e-0651.2
NC_019970:1991944:1999871199987120009441074Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeRNA polymerase, sigma 70 subunit, RpoD6e-0650.8
NC_015555:863173:8722008722008732731074Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeRNA polymerase, sigma 70 subunit, RpoD subfamily7e-0650.8
NC_010556:2773396:279301027930102793807798Exiguobacterium sibiricum 255-15, complete genomeRNA polymerase, sigma 28 subunit, FliA/WhiG family7e-0650.8
NC_015167:724934:728042728042728905864Cellulophaga lytica DSM 7489 chromosome, complete genomeRpoD subfamily RNA polymerase sigma 70 subunit8e-0650.4
NC_008529:1042220:1071584107158410727021119Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeDNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)9e-0650.4
NC_015638:591964:593277593277594140864Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeRpoD subfamily RNA polymerase sigma-70 subunit1e-0550.4