Pre_GI: BLASTP Hits

Some Help

Query: NC_009614:868452:874565 Bacteroides vulgatus ATCC 8482 chromosome, complete genome

Start: 874565, End: 875092, Length: 528

Host Lineage: Bacteroides vulgatus; Bacteroides; Bacteroidaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: Normal gastrointestinal bacterium. This group of microbes constitute the most abundant members of the intestinal microflora of mammals. Typically they are symbionts, but they can become opportunistic pathogens in the peritoneal (intra-abdominal) cavity. Breakdown of complex plant polysaccharides such as cellulose and hemicellulose and host-derived polysaccharides such as mucopolysaccharides is aided by the many enzymes these organisms produce. Bacteroides vulgatus and Bacteroides thetaiotaomicron are the the most common fecal isolates from humans and other animals. Comparison of Bacteroides vulgatus with other Bacteroides species will provide information on their ability to colonize and exploit the intestinal environment.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004663:3827521:384690938469093847418510Bacteroides thetaiotaomicron VPI-5482, complete genomeRNA polymerase ECF-type sigma factor6e-60229
NC_015160:4285542:430098843009884301557570Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-1374.3
NC_015160:2239933:226227222622722262844573Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-1270.1
NC_004663:5194400:520235452023545202908555Bacteroides thetaiotaomicron VPI-5482, complete genomeRNA polymerase ECF-type sigma factor1e-1169.3
NC_016609:2951301:297559729755972976196600Niastella koreensis GR20-10 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-1169.3
NC_019960:1272956:131266813126681313201534Prevotella dentalis DSM 3688 chromosome 1, complete sequenceRNA polymerase sigma-70 factor, bacteroides expansion family 11e-1065.9
NC_009615:4031335:404888040488804049425546Parabacteroides distasonis ATCC 8503 chromosome, complete genomeECF-type RNA polymerase sigma factor1e-0962.8
NC_008700:2451798:247336124733612474008648Shewanella amazonensis SB2B, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0962.8
NC_009092:1684467:170170617017061702344639Shewanella loihica PV-4, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0961.6
NC_015277:2283530:229844122984412299025585Sphingobacterium sp. 21 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0960.8
NC_015277:5211779:522919252291925229782591Sphingobacterium sp. 21 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-0959.7
NC_009615:1469642:151497515149751515514540Parabacteroides distasonis ATCC 8503 chromosome, complete genomeRNA polymerase ECF-type sigma factor9e-0959.7
NC_019960:260997:265241265241265822582Prevotella dentalis DSM 3688 chromosome 1, complete sequenceRNA polymerase sigma-70 factor, bacteroides expansion family 11e-0859.3
NC_004459:1794540:181002018100201810580561Vibrio vulnificus CMCP6 chromosome I, complete sequenceRNA polymerase sigma-70 factor2e-0858.5
NC_015160:3180193:319703631970363197602567Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0755.8
NC_015164:1812439:182623318262331826790558Bacteroides salanitronis DSM 18170 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0755.1
NC_015160:3749636:375426437542643754857594Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0754.7
NC_014150:1006000:102603910260391026611573Brachyspira murdochii DSM 12563 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-0753.1
NC_010505:5967324:597965759796575980331675Methylobacterium radiotolerans JCM 2831, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-0753.1
NC_015966:1145974:116775911677591168322564Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-0652.8
NC_009142:6199326:620408662040866204679594Saccharopolyspora erythraea NRRL 2338, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0652.4
NC_009615:3756196:376116937611693761735567Parabacteroides distasonis ATCC 8503 chromosome, complete genomeRNA polymerase ECF-type sigma factor1e-0652.4
NC_006347:625328:638035638035638796762Bacteroides fragilis YCH46, complete genomeRNA polymerase ECF-type sigma factor2e-0652
NC_015164:2683162:268699926869992687556558Bacteroides salanitronis DSM 18170 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0652
NC_016776:625628:641499641499642059561Bacteroides fragilis 638R, complete genomeputative ECF-type RNA polymerase sigma factor2e-0652
NC_016609:4152977:416982841698284170394567Niastella koreensis GR20-10 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-0652
NC_010172:480000:497599497599498279681Methylobacterium extorquens PA1, complete genomeRNA polymerase sigma factor, sigma-70 family5e-0650.4
NC_016610:2489415:249031924903192490903585Tannerella forsythia ATCC 43037 chromosome, complete genomeRNA polymerase sigma-70 factor6e-0650.4
NC_015844:1188360:120641312064131207012600Zobellia galactanivorans, complete genomeRNA polymerase ECF-type sigma factor6e-0650.4
NC_009615:2902871:291847629184762919027552Parabacteroides distasonis ATCC 8503 chromosome, complete genomeRNA polymerase ECF-type sigma factor7e-0650.1
NC_009615:3581619:358324535832453583757513Parabacteroides distasonis ATCC 8503 chromosome, complete genomeRNA polymerase ECF-type sigma factor9e-0649.7