Pre_GI: BLASTP Hits

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Query: NC_009567:904922:918852 Haemophilus influenzae PittGG chromosome, complete genome

Start: 918852, End: 919763, Length: 912

Host Lineage: Haemophilus influenzae; Haemophilus; Pasteurellaceae; Pasteurellales; Proteobacteria; Bacteria

General Information: Strain PittGG is a non-typeable Haemophilus influenzae (NTHi) isolate recovered by Dr. Robert Wadowsky from the external ear discharge of a spontaneously perforated tympanic membrane of a child in Pittsburgh, USA who had been diagnosed with otorrhea. Causes respiratory tract infections primarily in children. A group of organisms that are either obligate parasites or commensal organisms found in animal mucous membranes. Almost all species require the presence of important growth factors found in the blood of their hosts, including either X factor (protoporphyrin IX or heme) or V factor (nicotinamide adenine dinucleotide (NAD or NADP)). This organism was first isolated in the 1890s during an influenza pandemic by Pfeiffer, and was originally thought to be the source of influenza, although later it was shown to be a secondary pathogen and may be synergistic with the influenza virus. This bacterium is one of the leading causes of meningitis in young children, and it may also cause septicemia, otitis media (inflammation of the middle ear), sinusitis (inflammation of the sinus cavity) and chronic bronchitis. It is highly adapted to its human host and typically lives in the nasopharynx and is a major cause of lower respiratory infections in infants and small children in developing countries (type 1b strain), although vaccine use has resulted in the decline of infections. The encapsulated organism can penetrate the blood and avoid both phagocytosis and complement-mediated lysis. All known strains produce neuraminidase and an IgA protease as well as fimbrial adhesins for attachment.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007146:1405459:141332914133291414225897Haemophilus influenzae 86-028NP, complete genomerecombination associated protein1e-158558
NC_009053:553298:561319561319562221903Actinobacillus pleuropneumoniae L20, complete genomeRecombination-associated protein RdgC3e-79295
NC_011852:211314:212416212416213333918Haemophilus parasuis SH0165, complete genomerecombination associated protein dependent growth factor C9e-79293
NC_008149:1002453:102640310264031027314912Yersinia pestis Nepal516, complete genomerecombination associated protein RdgC5e-68258
NC_017328:335160:356588356588357571984Shigella flexneri 2002017 chromosome, complete genomeNonspecific DNA binding protein2e-66252
NC_009778:959982:974256974256975185930Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-57223
NC_006370:768745:791491791491792474984Photobacterium profundum SS9 chromosome 1, complete sequencerecombination associated protein5e-56218
NC_009092:3239500:325217432521743253085912Shewanella loihica PV-4, complete genomeputative exonuclease, RdgC6e-53207
NC_008321:3232000:323335832333583234272915Shewanella sp. MR-4, complete genomeputative exonuclease, RdgC7e-52204
NC_018080:1730534:173436917343691735289921Pseudomonas aeruginosa DK2 chromosome, complete genomerecombination associated protein4e-47188
NC_013508:876431:888993888993889682690Edwardsiella tarda EIB202, complete genomerecombination-associated protein RdgC2e-46186
NC_012660:2045398:204890320489032049823921Pseudomonas fluorescens SBW25 chromosome, complete genomerecombination associated protein9e-46184
NC_010943:1938136:195274719527471953649903Stenotrophomonas maltophilia K279a, complete genomeputative recombination-associated protein1e-34146
NC_014307:2760347:279058927905892791512924Ralstonia solanacearum CFBP2957 chromosome, complete genomerecombination associated protein1e-31137
NC_010645:369408:405880405880406782903Bordetella avium 197N, complete genomerecombination associated protein4e-31135
NC_016616:2768053:277026627702662771168903Dechlorosoma suillum PS chromosome, complete genomeDNA recombination-dependent growth factor C1e-28127
NC_017515:1402218:141862614186261419525900Neisseria meningitidis M04-240196 chromosome, complete genomerecombination-associated protein RdgC2e-28126
NC_017501:1493292:151127015112701512169900Neisseria meningitidis 8013, complete genomerecombination associated protein RdgC2e-28126
NC_017516:1408000:142687814268781427777900Neisseria meningitidis H44/76 chromosome, complete genomerecombination-associated protein RdgC2e-28126
NC_008767:804655:805765805765806664900Neisseria meningitidis FAM18, complete genomeRdgC protein2e-28126
NC_003116:1018813:101991310199131020812900Neisseria meningitidis Z2491, complete genomerecombination associated protein4e-28125
NC_017512:789600:790700790700791599900Neisseria meningitidis WUE 2594, complete genomerecombination associated protein RdgC4e-28125
NC_017517:898771:899239899239900138900Neisseria meningitidis M01-240355 chromosome, complete genomerecombination-associated protein RdgC4e-28125
NC_003295:659837:664810664810665733924Ralstonia solanacearum GMI1000, complete genomerecombination associated protein4e-28125
NC_013446:1724000:174428917442891745260972Comamonas testosteroni CNB-2, complete genomeputative exonuclease, RdgC7e-24111
NC_013446:3034486:304803330480333048992960Comamonas testosteroni CNB-2, complete genomeputative exonuclease, RdgC1e-1997.1
NC_010677:1296000:131357913135791314439861Francisella tularensis subsp. mediasiatica FSC147, complete genomerecombination associated protein2e-1790.1
NC_014836:1606587:160658716065871607453867Desulfurispirillum indicum S5 chromosome, complete genomehypothetical protein5e-1272