Pre_GI: BLASTP Hits

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Query: NC_009565:2306574:2328699 Mycobacterium tuberculosis F11, complete genome

Start: 2328699, End: 2328965, Length: 267

Host Lineage: Mycobacterium tuberculosis; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (genotype F11) represents the largest portion of isolates recovered from tuberculosis patients during a TB epidemic in the Western Cape of South Africa. Causative agent of tuberculosis. Like other closely related Actinomycetales, such as Nocardia and Corynebacterium, mycobacteria have unusually high genomic DNA GC content and are capable of producing mycolic acids as major components of their cell wall. This bacterium is the causative agent of tuberculosis - a chronic infectious disease with a growing incidence worldwide. It infects 1.7 billion people a year (~33% of the entire world population) and causes over 3 million deaths/year. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. The sluggish growth rate is a result of the tough cell wall that resists the passage of nutrients into the cell and inhibits waste products to be excreted out of the cell. The specialized cell envelope of this organism resembles a modified Gram positive cell wall. It also contains complex fatty acids, such as mycolic acids, that cause the waxy appearance and impermeability of the envelope. These acids are found bound to the cell envelope, but also form cord factors when linked with a carbohydrate component to form a cord-like structure. Primary infection occurs by inhalation of the organism in droplets that are aerosolized by an infected person. The organism initially replicates in cells of the terminal airways, after which it is taken up by, and replicates in, alveolar macrophages. Macrophages distribute the organism to other areas of the lungs and the regional lymph nodes. Once a cell-mediated hypersensitivity immune response develops, replication of the organism decreases and the bacteria become restricted to developing granulomas.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017026:2286000:230740823074082307674267Mycobacterium tuberculosis RGTB327 chromosome, complete genome30S ribosomal protein S181e-44178
NC_016804:2254979:227710422771042277370267Mycobacterium bovis BCG str. Mexico chromosome, complete genome30S ribosomal protein S181e-44178
NC_014218:1948165:196264719626471962883237Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeribosomal protein S183e-21100
NC_009142:827912:846322846322846567246Saccharopolyspora erythraea NRRL 2338, complete genome30S ribosomal protein S186e-2199.4
NC_009953:5733211:573672557367255736964240Salinispora arenicola CNS-205 chromosome, complete genome30S ribosomal protein S184e-2096.7
NC_015671:3470903:349418734941873494423237Cellvibrio gilvus ATCC 13127 chromosome, complete genome30S ribosomal protein S182e-1994
NC_018720:357716:374582374582374830249Bifidobacterium asteroides PRL2011 chromosome, complete genome30S ribosomal protein S181e-1788.6
NC_012814:1757753:175822017582201758468249Bifidobacterium animalis subsp. lactis Bl-04, complete genome30S ribosomal protein S183e-1787.4
NC_012815:1757992:175799217579921758240249Bifidobacterium animalis subsp. lactis DSM 10140, complete genome30S ribosomal protein S183e-1787.4
NC_017219:275476:281797281797282045249Bifidobacterium longum subsp. infantis ATCC 15697, complete genome30S ribosomal protein S184e-1786.7
NC_014638:321382:338722338722338970249Bifidobacterium bifidum PRL2010 chromosome, complete genome30S ribosomal protein S185e-1786.7
NC_016947:70210:761247612476378255Mycobacterium intracellulare MOTT-02 chromosome, complete genome30S ribosomal protein S181e-1582
NC_008699:4922465:494168949416894941925237Nocardioides sp. JS614, complete genomeribosomal protein S184e-1580.1
NC_003888:4251867:430425843042584304494237Streptomyces coelicolor A3(2), complete genome30S ribosomal protein S186e-1579.7
NC_003155:5253923:525392352539235254159237Streptomyces avermitilis MA-4680, complete genome30S ribosomal protein S186e-1579.7
NC_016111:3308310:331689433168943317130237Streptomyces cattleya NRRL 8057, complete genome30S ribosomal protein S187e-1579.3
NC_018681:9262000:926462892646289264879252Nocardia brasiliensis ATCC 700358 chromosome, complete genome30S ribosomal protein S188e-1579.3
NC_021177:4041915:406219940621994062435237Streptomyces fulvissimus DSM 40593, complete genome30S ribosomal protein S18 11e-1479
NC_018750:3988196:400498540049854005221237Streptomyces venezuelae ATCC 10712, complete genomeSSU ribosomal protein S18p1e-1478.6
NC_009338:912894:916106916106916372267Mycobacterium gilvum PYR-GCK chromosome, complete genome30S ribosomal protein S182e-1374.3
NC_014363:8228:287342873429006273Olsenella uli DSM 7084 chromosome, complete genomeSSU ribosomal protein S18P5e-1269.7
NC_012526:4462:114161141611694279Deinococcus deserti VCD115, complete genomeputative 30S ribosomal protein S181e-1168.9
NC_010296:4384000:440577844057784405993216Microcystis aeruginosa NIES-843, complete genome30S ribosomal protein S181e-1168.2
NC_005957:5203915:522398052239805224213234Bacillus thuringiensis serovar konkukian str. 97-27, complete30S ribosomal protein S188e-1165.9
NC_003997:5200805:521359052135905213823234Bacillus anthracis str. Ames, complete genome30S ribosomal protein S188e-1165.9
NC_006274:5267585:528721252872125287445234Bacillus cereus E33L, complete genome30S ribosomal protein S188e-1165.9
NC_012472:5239944:525580852558085256041234Bacillus cereus 03BB102, complete genome30S ribosomal protein S188e-1165.9
NC_007530:5197854:521371652137165213949234Bacillus anthracis str. 'Ames Ancestor', complete genome30S ribosomal protein S188e-1165.9
NC_005945:5202176:521496152149615215194234Bacillus anthracis str. Sterne, complete genome30S ribosomal protein S188e-1165.9
NC_014335:5165211:518189151818915182124234Bacillus cereus biovar anthracis str. CI chromosome, complete30S ribosomal protein S188e-1165.9
NC_012659:5200831:521361652136165213849234Bacillus anthracis str. A0248, complete genome30S ribosomal protein S188e-1165.9
NC_016779:5189139:520920352092035209436234Bacillus cereus F837/76 chromosome, complete genome30S ribosomal protein S188e-1165.9
NC_003098:1372875:137457013745701374809240Streptococcus pneumoniae R6, complete genome30S ribosomal protein S181e-1065.1
NC_008533:1380406:138210113821011382340240Streptococcus pneumoniae D39, complete genomeribosomal protein S181e-1065.1
NC_012469:1403412:140510714051071405346240Streptococcus pneumoniae Taiwan19F-14, complete genomeribosomal protein S181e-1065.1
NC_012466:1367099:136879413687941369033240Streptococcus pneumoniae JJA, complete genomeribosomal protein S181e-1065.1
NC_011900:1451545:145693014569301457169240Streptococcus pneumoniae ATCC 700669, complete genome30S ribosomal protein S181e-1065.1
NC_012468:1453763:145545814554581455697240Streptococcus pneumoniae 70585, complete genome30S ribosomal protein S181e-1065.1
NC_004722:5381208:539798053979805398213234Bacillus cereus ATCC 14579, complete genome30S ribosomal protein S182e-1064.7
NC_011658:5239509:525532852553285255561234Bacillus cereus AH187 chromosome, complete genome30S ribosomal protein S182e-1064.7
NC_016771:5191937:520775552077555207988234Bacillus cereus NC7401, complete genome30S ribosomal protein S182e-1064.7
NC_017200:5325977:534179753417975342030234Bacillus thuringiensis serovar finitimus YBT-020 chromosome,30S ribosomal protein S182e-1064.7
NC_006576:456569:479538479538479753216Synechococcus elongatus PCC 6301, complete genome30S ribosomal protein S181e-1064.7
NC_016609:6361862:636186263618626362128267Niastella koreensis GR20-10 chromosome, complete genome30S ribosomal protein S182e-1064.3
NC_009725:3878862:390171339017133901958246Bacillus amyloliquefaciens FZB42, complete genomeRpsR3e-1063.9
NC_019842:3921424:394448639444863944725240Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,30S ribosomal protein S183e-1063.9
NC_020410:3868573:389341738934173893656240Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeribosomal protein S183e-1063.9
NC_017188:3900951:392067339206733920912240Bacillus amyloliquefaciens TA208 chromosome, complete genome30S ribosomal protein S183e-1063.9
NC_010321:2319820:234272423427242342990267Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, complete30S ribosomal protein S184e-1063.5
NC_014964:2301835:232473923247392325005267Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, complete30S ribosomal protein S184e-1063.5
NC_007335:331072:335642335642335863222Prochlorococcus marinus str. NATL2A, complete genome30S ribosomal protein S181e-0962
NC_008819:936929:939742939742939963222Prochlorococcus marinus str. NATL1A, complete genome30S Ribosomal protein S181e-0962
NC_009328:3504454:353432235343223534597276Geobacillus thermodenitrificans NG80-2 chromosome, complete genome30S ribosomal protein S181e-0961.6
NC_005071:786000:807278807278807499222Prochlorococcus marinus str. MIT 9313, complete genome30S ribosomal protein S181e-0961.6
NC_009718:731670:735820735820736050231Fervidobacterium nodosum Rt17-B1, complete genomeribosomal protein S182e-0961.6
NC_007348:2558500:255876525587652559043279Ralstonia eutropha JMP134 chromosome 2, complete sequence30S ribosomal protein S183e-0960.8
NC_012214:594667:602151602151602378228Erwinia pyrifoliae Ep1/96, complete genome30S ribosomal protein S183e-0960.8
NC_012997:541648:564335564335564562228Teredinibacter turnerae T7901, complete genomeribosomal protein S183e-0960.8
NC_013364:5083949:510735551073555107582228Escherichia coli O111:H- str. 11128, complete genome30S ribosomal protein S183e-0960.8
NC_012918:1697860:173131817313181731596279Geobacter sp. M21 chromosome, complete genome30S ribosomal protein S182e-0960.8
NC_014972:2089003:209917320991732099412240Desulfobulbus propionicus DSM 2032 chromosome, complete genome30S ribosomal protein S18P4e-0960.5
NC_015519:2739347:274033727403372740561225Tepidanaerobacter sp. Re1 chromosome, complete genome30S ribosomal protein S183e-0960.5
NC_010163:171148:186539186539186781243Acholeplasma laidlawii PG-8A chromosome, complete genome30S ribosomal protein S184e-0960.1
NC_013515:1623407:163044616304461630679234Streptobacillus moniliformis DSM 12112, complete genomeribosomal protein S184e-0960.1
NC_015275:1223088:123610712361071236340234Clostridium lentocellum DSM 5427 chromosome, complete genomeribosomal protein S185e-0960.1
NC_015690:8645500:864743586474358647725291Paenibacillus mucilaginosus KNP414 chromosome, complete genomeRpsR6e-0959.7
NC_016935:8716704:872265887226588722948291Paenibacillus mucilaginosus 3016 chromosome, complete genomeprotein RpsR6e-0959.7
NC_007973:2150962:215295721529572153235279Ralstonia metallidurans CH34 chromosome 1, complete sequenceribosomal protein S185e-0959.7
NC_013222:2795919:281433228143322814628297Robiginitalea biformata HTCC2501, complete genomeribosomal protein S187e-0959.3
NC_013406:7092510:709758470975847097856273Paenibacillus sp. Y412MC10 chromosome, complete genome30S ribosomal protein S187e-0959.3
NC_010516:3903867:394120039412003941442243Clostridium botulinum B1 str. Okra, complete genomeribosomal protein S187e-0959.3
NC_010520:3938490:397585139758513976093243Clostridium botulinum A3 str. Loch Maree, complete genomeribosomal protein S187e-0959.3
NC_009495:3832500:386984338698433870085243Clostridium botulinum A str. ATCC 3502 chromosome, complete genome30S ribosomal protein S187e-0959.3
NC_009698:3706154:374348737434873743729243Clostridium botulinum A str. Hall chromosome, complete genome30S ribosomal protein S187e-0959.3
NC_009699:3940984:397831839783183978560243Clostridium botulinum F str. Langeland chromosome, complete genome30S ribosomal protein S187e-0959.3
NC_017297:3939328:397601439760143976256243Clostridium botulinum F str. 230613 chromosome, complete genome30S ribosomal protein S187e-0959.3
NC_018012:1274500:127759712775971277821225Thiocystis violascens DSM 198 chromosome, complete genome30S ribosomal protein S186e-0959.3
NC_012778:2015409:201962020196202019883264Eubacterium eligens ATCC 27750, complete genomesmall subunit ribosomal protein S181e-0858.9
NC_012781:3087467:310207431020743102331258Eubacterium rectale ATCC 33656, complete genome30S ribosomal protein S183e-0857.4
NC_007951:2206263:220884922088492209124276Burkholderia xenovorans LB400 chromosome 1, complete sequenceRibosomal protein S183e-0857.4
NC_011837:3814000:388023238802323880486255Clostridium kluyveri NBRC 12016, complete genome30S ribosomal protein S184e-0856.6
NC_009706:3882500:394872939487293948983255Clostridium kluyveri DSM 555 chromosome, complete genome30S ribosomal protein S184e-0856.6
NC_011963:1482042:150659315065931506820228Rhodobacter sphaeroides KD131 chromosome 1, complete sequence30S ribosomal protein S185e-0856.6
NC_015949:1957185:196030019603001960578279Caldicellulosiruptor lactoaceticus 6A chromosome, complete genome30S ribosomal protein S186e-0856.2
NC_010003:605961:613339613339613569231Petrotoga mobilis SJ95, complete genomeribosomal protein S181e-0755.5
NC_017059:1727095:172889417288941729130237Rhodospirillum photometricum DSM 122, complete genome30S ribosomal protein S181e-0755.5
NC_015167:313506:335000335000335296297Cellulophaga lytica DSM 7489 chromosome, complete genome30S ribosomal protein S181e-0755.5
NC_015731:3274739:327894732789473279228282Nitrosomonas sp. Is79A3 chromosome, complete genome30S ribosomal protein S181e-0755.5
NC_014934:11341:357623576236058297Cellulophaga algicola DSM 14237 chromosome, complete genomessu ribosomal protein s18p1e-0755.1
NC_015672:203139:207307207307207534228Flexistipes sinusarabici DSM 4947 chromosome, complete genome30S ribosomal protein S181e-0755.1
NC_000918:35564:411974119741415219Aquifex aeolicus VF5, complete genomeribosomal protein S182e-0754.7
NC_018145:104303:119707119707119931225Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, complete30S ribosomal protein S183e-0754.3
NC_013355:105500:120837120837121061225Zymomonas mobilis subsp. mobilis NCIB 11163, complete genomeribosomal protein S183e-0754.3
NC_014394:2111985:213178721317872132062276Gallionella capsiferriformans ES-2 chromosome, complete genome30S ribosomal protein S183e-0753.9
NC_004757:230541:234051234051234329279Nitrosomonas europaea ATCC 19718, complete genomeRibosomal protein S184e-0753.5
NC_012559:2563922:257011325701132570340228Laribacter hongkongensis HLHK9, complete genomeRpsR4e-0753.1
NC_018677:111500:136822136822137061240Candidatus Portiera aleyrodidarum BT-B-HRs chromosome, completeSSU ribosomal protein S18p8e-0752.4
NC_011244:94756:123566123566123856291Borrelia recurrentis A1, complete genome30S ribosomal protein S189e-0752.4
NC_008710:108057:111420111420111713294Borrelia turicatae 91E135, complete genomeSSU ribosomal protein S18P3e-0650.8
NC_005295:1146500:116415711641571164444288Ehrlichia ruminantium str. Welgevonden, complete genome30S ribosomal protein S183e-0650.8
NC_006832:1125000:114275611427561143043288Ehrlichia ruminantium str. Welgevonden, complete genome30S ribosomal protein S183e-0650.8
NC_006831:1112000:113241011324101132697288Ehrlichia ruminantium str. Gardel, complete genome30S ribosomal protein S183e-0650.8