Pre_GI: BLASTP Hits

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Query: NC_009565:1629780:1650823 Mycobacterium tuberculosis F11, complete genome

Start: 1650823, End: 1651629, Length: 807

Host Lineage: Mycobacterium tuberculosis; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (genotype F11) represents the largest portion of isolates recovered from tuberculosis patients during a TB epidemic in the Western Cape of South Africa. Causative agent of tuberculosis. Like other closely related Actinomycetales, such as Nocardia and Corynebacterium, mycobacteria have unusually high genomic DNA GC content and are capable of producing mycolic acids as major components of their cell wall. This bacterium is the causative agent of tuberculosis - a chronic infectious disease with a growing incidence worldwide. It infects 1.7 billion people a year (~33% of the entire world population) and causes over 3 million deaths/year. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. The sluggish growth rate is a result of the tough cell wall that resists the passage of nutrients into the cell and inhibits waste products to be excreted out of the cell. The specialized cell envelope of this organism resembles a modified Gram positive cell wall. It also contains complex fatty acids, such as mycolic acids, that cause the waxy appearance and impermeability of the envelope. These acids are found bound to the cell envelope, but also form cord factors when linked with a carbohydrate component to form a cord-like structure. Primary infection occurs by inhalation of the organism in droplets that are aerosolized by an infected person. The organism initially replicates in cells of the terminal airways, after which it is taken up by, and replicates in, alveolar macrophages. Macrophages distribute the organism to other areas of the lungs and the regional lymph nodes. Once a cell-mediated hypersensitivity immune response develops, replication of the organism decreases and the bacteria become restricted to developing granulomas.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002945:1621765:164293216429321643738807Mycobacterium bovis AF2122/97, complete genometranscriptional regulatory protein1e-114412
NC_012522:7596039:762862976286297629378750Rhodococcus opacus B4, complete genomeputative SufR family transcriptional regulator2e-63242
NC_017301:1172660:119033611903361191109774Corynebacterium pseudotuberculosis C231 chromosome, completeIron-sulfur cluster biosynthesis transcriptional regulator SufR2e-45182
NC_014329:1169674:119051011905101191283774Corynebacterium pseudotuberculosis FRC41 chromosome, completeArsR family transcriptional regulator2e-45182
NC_017303:1172656:119033911903391191187849Corynebacterium pseudotuberculosis I19 chromosome, complete genomeIron-sulfur cluster biosynthesis transcriptional regulator SufR2e-45182
NC_017031:1172644:119032511903251191173849Corynebacterium pseudotuberculosis P54B96 chromosome, completeIron-sulfur cluster biosynthesis transcriptional regulator SufR2e-45182
NC_016932:1157587:117526811752681176065798Corynebacterium pseudotuberculosis 316 chromosome, complete genomeIron-sulfur cluster biosynthesis transcriptional regulator SufR6e-45181
NC_016781:1169632:119046811904681191265798Corynebacterium pseudotuberculosis 3/99-5 chromosome, completeiron-sulfur cluster biosynthesis transcriptional regulator SufR2e-44179
NC_002935:1237585:130437113043711305087717Corynebacterium diphtheriae NCTC 13129, complete genomePutative DNA-binding protein6e-43174
NC_016783:1274000:130235813023581303074717Corynebacterium diphtheriae INCA 402 chromosome, complete genomeDeoR family transcriptional regulator6e-43174
NC_016799:1268706:133351513335151334171657Corynebacterium diphtheriae 31A chromosome, complete genomeDeoR family transcriptional regulator1e-39163
NC_016801:1255611:132319213231921323848657Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeDeoR family transcriptional regulator3e-39162
NC_016782:1251796:127806112780611278717657Corynebacterium diphtheriae 241 chromosome, complete genomeDeoR family transcriptional regulator2e-39162
NC_016785:1233384:125964812596481260304657Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomeDeoR family transcriptional regulator2e-39162
NC_016786:1251765:127803012780301278686657Corynebacterium diphtheriae HC01 chromosome, complete genomeDeoR family transcriptional regulator2e-39162
NC_016787:1240000:126748012674801268136657Corynebacterium diphtheriae HC03 chromosome, complete genomeDeoR family transcriptional regulator2e-39162
NC_016790:1218596:124485912448591245515657Corynebacterium diphtheriae VA01 chromosome, complete genomeDeoR family transcriptional regulator2e-39162
NC_016800:1243000:130662813066281307284657Corynebacterium diphtheriae BH8 chromosome, complete genomeDeoR family transcriptional regulator2e-39162
NC_016802:1256287:127896212789621279618657Corynebacterium diphtheriae HC02 chromosome, complete genomeDeoR family transcriptional regulator2e-39162
NC_016788:1214026:127747012774701278126657Corynebacterium diphtheriae HC04 chromosome, complete genomeDeoR family transcriptional regulator2e-39162
NC_016789:1295918:132217713221771322833657Corynebacterium diphtheriae PW8 chromosome, complete genomeDeoR family transcriptional regulator2e-39162
NC_014643:2056280:210988921098892110713825Rothia dentocariosa ATCC 17931 chromosome, complete genomeArsR family transcriptional regulator9e-23107
NC_011884:3393500:340270234027023403355654Cyanothece sp. PCC 7425, complete genomeputative transcriptional regulator1e-1170.1
NC_004603:230000:255983255983256597615Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein8e-0754.3