Pre_GI: BLASTP Hits

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Query: NC_009525:3128786:3136987 Mycobacterium tuberculosis H37Ra, complete genome

Start: 3136987, End: 3138135, Length: 1149

Host Lineage: Mycobacterium tuberculosis; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (H37Ra; ATCC 25177) is an avirulent strain derived from its virulent parent strain H37 (isolated from a 19 year-old male patient with chronic pulmonary tuberculosis by Edward R. Baldwin in 1905). Causative agent of tuberculosis. This genus comprises a number of Gram-positive, acid-fast, rod-shaped aerobic bacteria and is the only member of the family Mycobacteriaceae within the order Actinomycetales. Like other closely related Actinomycetales, such as Nocardia and Corynebacterium, mycobacteria have unusually high genomic DNA GC content and are capable of producing mycolic acids as major components of their cell wall. This bacterium is the causative agent of tuberculosis - a chronic infectious disease with a growing incidence worldwide. It infects 1.7 billion people a year (~33% of the entire world population) and causes over 3 million deaths/year. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. The sluggish growth rate is a result of the tough cell wall that resists the passage of nutrients into the cell and inhibits waste products to be excreted out of the cell. The specialized cell envelope of this organism resembles a modified Gram positive cell wall. It also contains complex fatty acids, such as mycolic acids, that cause the waxy appearance and impermeability of the envelope. These acids are found bound to the cell envelope, but also form cord factors when linked with a carbohydrate component to form a cord-like structure. Primary infection occurs by inhalation of the organism in droplets that are aerosolized by an infected person. The organism initially replicates in cells of the terminal airways, after which it is taken up by, and replicates in, alveolar macrophages. Macrophages distribute the organism to other areas of the lungs and the regional lymph nodes. Once a cell-mediated hypersensitivity immune response develops, replication of the organism decreases and the bacteria become restricted to developing granulomas.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002755:3110929:3119201311920131204931293Mycobacterium tuberculosis CDC1551, complete genomehypothetical protein0775
NC_000962:3116818:3124996312499631261441149Mycobacterium tuberculosis H37Rv, complete genomehypothetical protein0775
NC_017026:3110155:3118839311883931200861248Mycobacterium tuberculosis RGTB327 chromosome, complete genomehypothetical protein0773
NC_016768:1279178:1287537128753712887841248Mycobacterium tuberculosis KZN 4207 chromosome, complete genomehypothetical protein0773
NC_012943:1279228:1287593128759312888401248Mycobacterium tuberculosis KZN 1435 chromosome, complete genomehypothetical protein0773
NC_009565:3128094:3136625313662531378721248Mycobacterium tuberculosis F11, complete genomehypothetical protein0773
NC_019950:3139865:3149366314936631505141149Mycobacterium canettii CIPT 140060008 complete genomeConserved CRISPR-associated protein of unknown function Csm60734
NC_015848:3175692:3184983318498331861311149Mycobacterium canettii CIPT 140010059, complete genomehypothetical protein0734
NC_002945:3073370:308179530817953082706912Mycobacterium bovis AF2122/97, complete genomehypothetical protein4e-176617
NC_016804:3049631:3058575305857530595851011Mycobacterium bovis BCG str. Mexico chromosome, complete genomehypothetical protein1e-175615
NC_008769:3070266:3079210307921030802201011Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomehypothetical protein1e-175615
NC_012207:3063039:3071983307198330729931011Mycobacterium bovis BCG str. Tokyo 172, complete genomehypothetical protein1e-175615
NC_016804:3049631:305833830583383058550213Mycobacterium bovis BCG str. Mexico chromosome, complete genome5e-33142
NC_008769:3070266:307897330789733079185213Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome5e-33142
NC_012207:3063039:307174630717463071958213Mycobacterium bovis BCG str. Tokyo 172, complete genome5e-33142
NC_015873:1487127:1501499150149915028511353Megasphaera elsdenii DSM 20460, complete genomehypothetical protein3e-22106