Pre_GI: BLASTP Hits

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Query: NC_009525:3128786:3135616 Mycobacterium tuberculosis H37Ra, complete genome

Start: 3135616, End: 3135957, Length: 342

Host Lineage: Mycobacterium tuberculosis; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (H37Ra; ATCC 25177) is an avirulent strain derived from its virulent parent strain H37 (isolated from a 19 year-old male patient with chronic pulmonary tuberculosis by Edward R. Baldwin in 1905). Causative agent of tuberculosis. This genus comprises a number of Gram-positive, acid-fast, rod-shaped aerobic bacteria and is the only member of the family Mycobacteriaceae within the order Actinomycetales. Like other closely related Actinomycetales, such as Nocardia and Corynebacterium, mycobacteria have unusually high genomic DNA GC content and are capable of producing mycolic acids as major components of their cell wall. This bacterium is the causative agent of tuberculosis - a chronic infectious disease with a growing incidence worldwide. It infects 1.7 billion people a year (~33% of the entire world population) and causes over 3 million deaths/year. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. The sluggish growth rate is a result of the tough cell wall that resists the passage of nutrients into the cell and inhibits waste products to be excreted out of the cell. The specialized cell envelope of this organism resembles a modified Gram positive cell wall. It also contains complex fatty acids, such as mycolic acids, that cause the waxy appearance and impermeability of the envelope. These acids are found bound to the cell envelope, but also form cord factors when linked with a carbohydrate component to form a cord-like structure. Primary infection occurs by inhalation of the organism in droplets that are aerosolized by an infected person. The organism initially replicates in cells of the terminal airways, after which it is taken up by, and replicates in, alveolar macrophages. Macrophages distribute the organism to other areas of the lungs and the regional lymph nodes. Once a cell-mediated hypersensitivity immune response develops, replication of the organism decreases and the bacteria become restricted to developing granulomas.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017026:3110155:311746831174683117809342Mycobacterium tuberculosis RGTB327 chromosome, complete genomehypothetical protein1e-59228
NC_002945:3073370:308018730801873080528342Mycobacterium bovis AF2122/97, complete genomehypothetical protein1e-59228
NC_002755:3110929:311783031178303118171342Mycobacterium tuberculosis CDC1551, complete genomeCRISPR-associated protein Cas21e-59228
NC_008769:3070266:307760230776023077943342Mycobacterium bovis BCG str. Pasteur 1173P2, complete genomehypothetical protein1e-59228
NC_012207:3063039:307037530703753070716342Mycobacterium bovis BCG str. Tokyo 172, complete genomehypothetical protein1e-59228
NC_000962:3116818:312362531236253123966342Mycobacterium tuberculosis H37Rv, complete genomehypothetical protein1e-59228
NC_009565:3128094:313525431352543135595342Mycobacterium tuberculosis F11, complete genomehypothetical protein1e-59228
NC_012943:1279228:128987012898701290211342Mycobacterium tuberculosis KZN 1435 chromosome, complete genomehypothetical protein1e-59228
NC_016768:1279178:128981412898141290155342Mycobacterium tuberculosis KZN 4207 chromosome, complete genomehypothetical protein1e-59228
NC_016804:3049631:305696730569673057308342Mycobacterium bovis BCG str. Mexico chromosome, complete genomehypothetical protein1e-59228
NC_015848:3175692:318361231836123183953342Mycobacterium canettii CIPT 140010059, complete genomehypothetical protein4e-59226
NC_019950:3139865:314799531479953148336342Mycobacterium canettii CIPT 140060008 complete genomePutative CRISPR-associated RNAse Cas24e-59226
NC_015873:1487127:149458314945831494888306Megasphaera elsdenii DSM 20460, complete genomeCRISPR-associated protein cas23e-1063.9
NC_008639:2358592:239252523925252392794270Chlorobium phaeobacteroides DSM 266, complete genomeCRISPR-associated protein Cas22e-0651.2
NC_008554:1664131:168328116832811683559279Syntrophobacter fumaroxidans MPOB, complete genomeCRISPR-associated protein Cas25e-0650.1