Some Help

Query: NC_009512:3068495 Pseudomonas putida F1, complete genome

Start: 3068495, End: 3088736, Length: 20242

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004129:3965947*3965947398362717681Pseudomonas fluorescens Pf-5, complete genome0698BLASTN svgBLASTP svg
NC_010552:24547762454776248709932324Burkholderia ambifaria MC40-6 chromosome 2, complete sequence7e-53216BLASTN svgBLASTP svg
NC_012721:1986436*1986436201260326168Burkholderia glumae BGR1 chromosome 2, complete genome2e-19105BLASTN svgBLASTP svg
NC_012660:3689223*3689223371658727365Pseudomonas fluorescens SBW25 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_010125:74904*749049987524972Gluconacetobacter diazotrophicus PAl 5, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_004129:31230003123000314059917600Pseudomonas fluorescens Pf-5, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_009512:469000*46900049317124172Pseudomonas putida F1, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_002947:49943354994335504935655022Pseudomonas putida KT2440, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_010501:36715173671517370459933083Pseudomonas putida W619, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_012660:2045398*2045398210849663099Pseudomonas fluorescens SBW25 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_010338:3743000*3743000380073857739Caulobacter sp. K31, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_002947:61525006152500618549933000Pseudomonas putida KT2440, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014217:80040680040682559925194Starkeya novella DSM 506 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_003296:14088914088916133820450Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, complete2e-0661.9BLASTN svgBLASTP svg