Pre_GI: BLASTN Hits

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Query: NC_009512:1025365 Pseudomonas putida F1, complete genome

Start: 1025365, End: 1044011, Length: 18647

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015556:4074367*4074367410534530979Pseudomonas fulva 12-X chromosome, complete genome01790BLASTN svgBLASTP svg
NC_004129:10149861014986103609921114Pseudomonas fluorescens Pf-5, complete genome01550BLASTN svgBLASTP svg
NC_019940:28348502834850285310318254Thioflavicoccus mobilis 8321 chromosome, complete genome3e-39170BLASTN svgBLASTP svg
NC_014323:3292082*3292082331943527354Herbaspirillum seropedicae SmR1 chromosome, complete genome3e-36161BLASTN svgBLASTP svg
NC_010002:65900816590081661609926019Delftia acidovorans SPH-1, complete genome3e-33151BLASTN svgBLASTP svg
NC_012214:74530274530276695921658Erwinia pyrifoliae Ep1/96, complete genome7e-31143BLASTN svgBLASTP svg
NC_010694:71550071550073887123372Erwinia tasmaniensis, complete genome3e-30141BLASTN svgBLASTP svg
NC_013716:5141269*5141269517008828820Citrobacter rodentium ICC168, complete genome1e-29139BLASTN svgBLASTP svg
NC_013961:30838163083816310609922284Erwinia amylovora, complete genome1e-23119BLASTN svgBLASTP svg
NC_015740:45083754508375452814119767Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete4e-23117BLASTN svgBLASTP svg
NC_013194:43052054305205432971824514Candidatus Accumulibacter phosphatis clade IIA str. UW-1, complete4e-23117BLASTN svgBLASTP svg
NC_021150:49296704929670497270143032Azotobacter vinelandii CA6, complete genome2e-19105BLASTN svgBLASTP svg
NC_012560:49296834929683497271443032Azotobacter vinelandii DJ, complete genome2e-19105BLASTN svgBLASTP svg
NC_009649:16907169074359926693Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,2e-19105BLASTN svgBLASTP svg
NC_014217:80040680040682559925194Starkeya novella DSM 506 chromosome, complete genome6e-19103BLASTN svgBLASTP svg
NC_020260:88230788230791401031704Cronobacter sakazakii Sp291, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_009667:1371924*1371924140112629203Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_020064:79422*7942212524145820Serratia marcescens FGI94, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_010572:28435892843589286504421456Streptomyces griseus subsp. griseus NBRC 13350, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_007643:2722265*2722265275282330559Rhodospirillum rubrum ATCC 11170, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_014831:329983*32998335731327331Thermaerobacter marianensis DSM 12885 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014761:74311374311376488521773Oceanithermus profundus DSM 14977 chromosome, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_013947:44133824413382443709923718Stackebrandtia nassauensis DSM 44728 chromosome, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_015379:67145456714545674216027616Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,2e-1281.8BLASTN svgBLASTP svg
NC_021177:54196205419620544465625037Streptomyces fulvissimus DSM 40593, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_018750:51144345114434513594121508Streptomyces venezuelae ATCC 10712, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_015953:47934844793484481122917746Streptomyces sp. SirexAA-E chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_008702:2259430*2259430228338423955Azoarcus sp. BH72, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_020260:1535394*1535394155809922706Cronobacter sakazakii Sp291, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_015968:204969*20496922599121023Enterobacter asburiae LF7a chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_014831:21330602133060217362540566Thermaerobacter marianensis DSM 12885 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_003047:3202125*3202125322912727003Sinorhizobium meliloti 1021, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_008148:30248673024867304671521849Rubrobacter xylanophilus DSM 9941, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_009512:755658*75565878272327066Pseudomonas putida F1, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_019940:32674363267436329462227187Thioflavicoccus mobilis 8321 chromosome, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_015389:17540617540619807822673Coriobacterium glomerans PW2 chromosome, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_014121:16533851653385167270919325Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete9e-0969.9BLASTN svgBLASTP svg
NC_013093:73773773773776222824492Actinosynnema mirum DSM 43827, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_015733:1680500*1680500170310522606Pseudomonas putida S16 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009512:56325915632591568653153941Pseudomonas putida F1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_003888:55505825550582557168721106Streptomyces coelicolor A3(2), complete genome1e-0765.9BLASTN svgBLASTP svg
NC_007908:10101621010162103411423953Rhodoferax ferrireducens T118, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_008789:7347*73473054023194Halorhodospira halophila SL1, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_015733:35958823595882362033824457Pseudomonas putida S16 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_005773:32205003220500325277732278Pseudomonas syringae pv. phaseolicola 1448A, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_009512:4287605*4287605432250934905Pseudomonas putida F1, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_012560:32827043282704330085218149Azotobacter vinelandii DJ, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_012779:16297311629731165390624176Edwardsiella ictaluri 93-146, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_013169:12900001290000131283622837Kytococcus sedentarius DSM 20547, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014837:23542412354241238131727077Pantoea sp. At-9b chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_015379:35706583570658359449623839Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,6e-0763.9BLASTN svgBLASTP svg
NC_015733:21946762194676221628521610Pseudomonas putida S16 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_021150:32827023282702330085018149Azotobacter vinelandii CA6, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_002947:53864895386489541416727679Pseudomonas putida KT2440, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_009778:14778411477841150009922259Enterobacter sakazakii ATCC BAA-894, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_013172:95377295377297644022669Brachybacterium faecium DSM 4810, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_014210:53708685370868538907818211Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,2e-0661.9BLASTN svgBLASTP svg
NC_015954:1222776*1222776126551142736Halophilic archaeon DL31 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_005070:1144777*1144777118894644170Synechococcus sp. WH 8102, complete genome9e-0660BLASTN svgBLASTP svg
NC_007948:46206614620661464325222592Polaromonas sp. JS666, complete genome9e-0660BLASTN svgBLASTP svg
NC_008027:4953432*4953432497941825987Pseudomonas entomophila L48, complete genome9e-0660BLASTN svgBLASTP svg
NC_009439:10117410117412533624163Pseudomonas mendocina ymp, complete genome9e-0660BLASTN svgBLASTP svg
NC_009832:2969376*2969376299269223317Serratia proteamaculans 568, complete genome9e-0660BLASTN svgBLASTP svg
NC_015733:443122*44312246159918478Pseudomonas putida S16 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_015968:2583721*2583721261035326633Enterobacter asburiae LF7a chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_002947:59610965961096598439523300Pseudomonas putida KT2440, complete genome9e-0660BLASTN svgBLASTP svg