Pre_GI: BLASTN Hits

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Query: NC_009512:1 Pseudomonas putida F1, complete genome

Start: 1, End: 18862, Length: 18862

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010501:111882518825Pseudomonas putida W619, complete genome030570BLASTN svgBLASTP svg
NC_010501:5735656*5735656577333937684Pseudomonas putida W619, complete genome0959BLASTN svgBLASTP svg
NC_012560:5338707*5338707537299934293Azotobacter vinelandii DJ, complete genome01072BLASTN svgBLASTP svg
NC_015733:5955467*5955467598799932533Pseudomonas putida S16 chromosome, complete genome01072BLASTN svgBLASTP svg
NC_021150:5298500*5298500533099932500Azotobacter vinelandii CA6, complete genome01072BLASTN svgBLASTP svg
NC_002947:61236086123608614375120144Pseudomonas putida KT2440, complete genome01164BLASTN svgBLASTP svg
NC_002516:6255854*6255854627999924146Pseudomonas aeruginosa PAO1, complete genome01842BLASTN svgBLASTP svg
NC_020209:4768500*4768500481226743768Pseudomonas poae RE*1-1-14, complete genome02050BLASTN svgBLASTP svg
NC_002947:8394*83945373745344Pseudomonas putida KT2440, complete genome025960BLASTN svgBLASTP svg
NC_009439:2427120*2427120248116354044Pseudomonas mendocina ymp, complete genome3e-178632BLASTN svgBLASTP svg
NC_015410:26985722698572274463646065Pseudomonas mendocina NK-01 chromosome, complete genome1e-149537BLASTN svgBLASTP svg
NC_015740:2692023*2692023271734525323Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete3e-129470BLASTN svgBLASTP svg
NC_009434:3611738*36117383748875137138Pseudomonas stutzeri A1501, complete genome3e-110406BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome2e-93351BLASTN svgBLASTP svg
NC_007492:43108284310828433716726340Pseudomonas fluorescens PfO-1, complete genome7e-65256BLASTN svgBLASTP svg
NC_008313:113975239752Ralstonia eutropha H16 chromosome 1, complete sequence1e-54222BLASTN svgBLASTP svg
NC_009092:4585784*4585784461549929716Shewanella loihica PV-4, complete genome2e-52214BLASTN svgBLASTP svg
NC_016002:111459914599Pseudogulbenkiania sp. NH8B, complete genome2e-49204BLASTN svgBLASTP svg
NC_015572:115300753007Methylomonas methanica MC09 chromosome, complete genome4e-48200BLASTN svgBLASTP svg
NC_007347:1*12859628596Ralstonia eutropha JMP134 chromosome 1, complete sequence2e-46194BLASTN svgBLASTP svg
NC_003295:3688000*3688000372599938000Ralstonia solanacearum GMI1000, complete genome1e-44188BLASTN svgBLASTP svg
NC_012856:112296322963Ralstonia pickettii 12D chromosome 1, complete genome9e-43182BLASTN svgBLASTP svg
NC_005085:111651116511Chromobacterium violaceum ATCC 12472, complete genome3e-39170BLASTN svgBLASTP svg
NC_010682:112474724747Ralstonia pickettii 12J chromosome 1, complete sequence2e-37165BLASTN svgBLASTP svg
NC_008825:4025705*4025705405199926295Methylibium petroleiphilum PM1, complete genome3e-30141BLASTN svgBLASTP svg
NC_007958:498549852839523411Rhodopseudomonas palustris BisB5, complete genome1e-29139BLASTN svgBLASTP svg
NC_010681:111969219692Burkholderia phytofirmans PsJN chromosome 1, complete sequence7e-28133BLASTN svgBLASTP svg
NC_010804:52000*520007319121192Burkholderia multivorans ATCC 17616 chromosome 1, complete7e-28133BLASTN svgBLASTP svg
NC_008702:111506115061Azoarcus sp. BH72, complete genome3e-27131BLASTN svgBLASTP svg
NC_015677:112102721027Ramlibacter tataouinensis TTB310 chromosome, complete genome5e-26127BLASTN svgBLASTP svg
NC_009076:75535*7553510652630992Burkholderia pseudomallei 1106a chromosome I, complete sequence5e-26127BLASTN svgBLASTP svg
NC_010943:24659762465976248809922124Stenotrophomonas maltophilia K279a, complete genome2e-25125BLASTN svgBLASTP svg
NC_015138:111600416004Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete7e-25123BLASTN svgBLASTP svg
NC_011662:114205242052Thauera sp. MZ1T, complete genome1e-23119BLASTN svgBLASTP svg
NC_006513:16954871695487172039324907Azoarcus sp. EbN1, complete genome4e-23117BLASTN svgBLASTP svg
NC_015422:111870118701Alicycliphilus denitrificans K601 chromosome, complete genome4e-23117BLASTN svgBLASTP svg
NC_020260:3931567*3931567395659925033Cronobacter sakazakii Sp291, complete genome4e-23117BLASTN svgBLASTP svg
NC_014323:111610816108Herbaspirillum seropedicae SmR1 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
CU928145:39585723958572397962121050Escherichia coli 55989 chromosome, complete genome7e-19103BLASTN svgBLASTP svg
NC_009778:41880004188000423044042441Enterobacter sakazakii ATCC BAA-894, complete genome7e-19103BLASTN svgBLASTP svg
NC_011748:39585723958572397962121050Escherichia coli 55989, complete genome7e-19103BLASTN svgBLASTP svg
NC_014733:2851984*2851984287799926016Methylovorus sp. MP688 chromosome, complete genome7e-19103BLASTN svgBLASTP svg
NC_011979:4293859*4293859431999926141Geobacter sp. FRC-32, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_015856:112197121971Collimonas fungivorans Ter331 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012724:1*11851018510Burkholderia glumae BGR1 chromosome 1, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_008576:4701930*4701930473149929570Magnetococcus sp. MC-1, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_010814:409940992609221994Geobacter lovleyi SZ, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013854:31263853126385315026623882Azospirillum sp. B510, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014722:115359353593Burkholderia rhizoxinica HKI 454, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_018750:3964784*3964784398396119178Streptomyces venezuelae ATCC 10712, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_009952:3522370*3522370356180439435Dinoroseobacter shibae DFL 12, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_008344:1*13873538735Nitrosomonas eutropha C91, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_013165:3146000*3146000318049934500Slackia heliotrinireducens DSM 20476, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008782:13080071308007132716219156Acidovorax sp. JS42, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_010611:3879190*3879190390849929310Acinetobacter baumannii ACICU, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_014151:4106624*4106624413399927376Cellulomonas flavigena DSM 20109 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_015389:2101841*2101841212999928159Coriobacterium glomerans PW2 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_015942:31851933185193321099925807Acidithiobacillus ferrivorans SS3 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_018697:1343756*1343756139248048725Cycloclasticus sp. P1 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_013510:1*11865618656Thermomonospora curvata DSM 43183, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_009138:51996551996554464624682Herminiimonas arsenicoxydans, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008578:2431074*2431074245799926926Acidothermus cellulolyticus 11B, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_007498:3655304*3655304367749922196Pelobacter carbinolicus DSM 2380, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_004578:5336773*5336773541660879836Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010682:19139411913941193635322413Ralstonia pickettii 12J chromosome 1, complete sequence2e-0661.9BLASTN svgBLASTP svg
NC_014210:5752651*5752651577999927349Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,2e-0661.9BLASTN svgBLASTP svg
NC_018868:61911361911367007150959Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_018665:1*12938529385Exiguobacterium antarcticum B7 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_012803:3691*36914264438954Micrococcus luteus NCTC 2665, complete genome9e-0660BLASTN svgBLASTP svg
NC_007644:3229*32292661523387Moorella thermoacetica ATCC 39073, complete genome9e-0660BLASTN svgBLASTP svg
NC_007333:3626510*3626510365399927490Thermobifida fusca YX, complete genome9e-0660BLASTN svgBLASTP svg
NC_007333:111820218202Thermobifida fusca YX, complete genome9e-0660BLASTN svgBLASTP svg