Pre_GI: BLASTP Hits

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Query: NC_009512:5920960:5938412 Pseudomonas putida F1, complete genome

Start: 5938412, End: 5939053, Length: 642

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:4790482:484228948422894842930642Pseudomonas putida ND6 chromosome, complete genome3-oxoadipate CoA-transferase, subunit B2e-111401
NC_011001:63986:639866398664642657Burkholderia cenocepacia J2315 chromosome 2, complete sequence3-oxoadipate CoA-transferase subunit B3e-88324
NC_007511:3512100:353156535315653532221657Burkholderia sp. 383 chromosome 2, complete sequence3-oxoadipate CoA-transferase3e-88324
NC_008061:2368517:239532523953252395981657Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence3-oxoacid CoA-transferase, subunit B3e-88324
NC_010552:58294:582945829458950657Burkholderia ambifaria MC40-6 chromosome 2, complete sequence3-oxoacid CoA-transferase, B subunit3e-88324
NC_017986:5833819:585352458535245854246723Pseudomonas putida ND6 chromosome, complete genome4-methyl-3-oxoadipate CoA-transferase beta-subunit8e-74276
NC_014931:5573942:559059355905935591240648Variovorax paradoxus EPS chromosome, complete genome3-oxoacid CoA-transferase, B subunit5e-73273
NC_011881:89705:110604110604111275672Arthrobacter chlorophenolicus A6 plasmid pACHL02, complete3-oxoacid CoA-transferase, B subunit4e-68257
NC_016604:3184855:322667732266773227360684Mycobacterium rhodesiae NBB3 chromosome, complete genome3-oxoacid CoA-transferase subunit B2e-63241
NC_010617:665830:669995669995670669675Kocuria rhizophila DC2201, complete genome3-oxoadipate CoA-transferase subunit B1e-62239
NC_020911:3076791:309762530976253098311687Octadecabacter antarcticus 307, complete genomefamily I CoA-transferase subunit B1e-60232
NC_008705:1839983:184649518464951847217723Mycobacterium sp. KMS, complete genome3-oxoacid CoA-transferase, B subunit2e-58225
NC_009077:1725683:177916317791631779885723Mycobacterium sp. JLS, complete genome3-oxoacid CoA-transferase, B subunit2e-58225
NC_008705:1839983:185991018599101860632723Mycobacterium sp. KMS, complete genome3-oxoacid CoA-transferase, B subunit2e-58225
NC_014958:557208:581357581357581986630Deinococcus maricopensis DSM 21211 chromosome, complete genome3-oxoacid CoA-transferase subunit B2e-57222
NC_014640:4951076:497611549761154976777663Achromobacter xylosoxidans A8 chromosome, complete genome3-oxoadipate CoA-transferase subunit B4e-54211
NC_020210:2044944:206240720624072063075669Geobacillus sp. GHH01, complete genomesuccinyl CoA:3-oxoacid CoA-transferase subunit B6e-54210
NC_006834:787500:814923814923815552630Xanthomonas oryzae pv. oryzae KACC10331, complete genomeIpsJ protein1e-52206
NC_015711:6522808:655595065559506556606657Myxococcus fulvus HW-1 chromosome, complete genome3-oxoacid CoA-transferase subunit B9e-53206
NC_013939:1927424:1941123194112319424631341Deferribacter desulfuricans SSM1, complete genome3-oxoacid CoA-transferase1e-52205
NC_010170:4409683:442517644251764425814639Bordetella petrii, complete genome3-oxoacid CoA-transferase subunit B3e-52204
NC_015514:3351052:335536733553673356041675Cellulomonas fimi ATCC 484 chromosome, complete genome3-oxoacid CoA-transferase subunit B2e-51202
NC_008700:1627401:164519216451921645848657Shewanella amazonensis SB2B, complete genome3-oxoacid CoA-transferase7e-51200
NC_016510:1958453:196398119639811964637657Flavobacterium columnare ATCC 49512 chromosome, complete genome3-oxoacid CoA-transferase subunit B family protein AtoA6e-50197
NC_011283:2323687:234602723460272346683657Klebsiella pneumoniae 342 chromosome, complete genome3-oxoacid CoA-transferase subunit B2e-49195
NC_008345:3287000:328773132877313288387657Shewanella frigidimarina NCIMB 400, complete genome3-oxoacid CoA-transferase, B subunit3e-49194
NC_021171:1689518:170285417028541703504651Bacillus sp. 1NLA3E, complete genomeScoB protein2e-47188
NC_010338:4148667:416498441649844165631648Caulobacter sp. K31, complete genome3-oxoacid CoA-transferase, B subunit3e-47187
NC_015673:525638:545198545198545836639Corynebacterium resistens DSM 45100 chromosome, complete genome3-oxoacid CoA-transferase subunit B7e-47186
NC_009454:259022:279910279910280572663Pelotomaculum thermopropionicum SI, complete genomeacyl CoA:acetate/3-ketoacid CoA transferase, beta subunit2e-46185
NC_014614:1259236:127595912759591276606648Clostridium sticklandii, complete genomeacetyl-CoA:acetoacetyl-CoA transferase, beta subunit2e-46185
NC_010170:1219641:123181512318151232453639Bordetella petrii, complete genome3-oxoacid CoA-transferase subunit B4e-46184
NC_012785:638000:644587644587645246660Kosmotoga olearia TBF 19.5.1, complete genome3-oxoacid CoA-transferase, B subunit5e-45181
NC_003454:339345:345583345583346236654Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeButyrate-acetoacetate CoA-transferase subunit B5e-45181
NC_020291:2487575:249613724961372496796660Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomebutyrate--acetoacetate CoA-transferase subunit B4e-44177
NC_009718:203998:214867214867215517651Fervidobacterium nodosum Rt17-B1, complete genome3-oxoacid CoA-transferase, B subunit5e-44177
NC_007953:572926:592790592790593425636Burkholderia xenovorans LB400 chromosome 3, complete sequence3-oxoacid CoA-transferase, subunit B1e-41169
NC_010003:1126800:115088611508861151536651Petrotoga mobilis SJ95, complete genome3-oxoacid CoA-transferase, B subunit1e-41169
NC_016751:469289:475170475170475820651Marinitoga piezophila KA3 chromosome, complete genome3-oxoacid CoA-transferase subunit B2e-41168
NC_001264:28266:5812258122595161395Deinococcus radiodurans R1 chromosome 2, complete sequencesuccinyl-CoA:3-ketoacid-CoA transferase, putative4e-40164
NC_012470:580373:603113603113603757645Streptococcus equi subsp. zooepidemicus, complete genomeacetate CoA-transferase beta subunit2e-37155
NC_008593:1917118:195374619537461954399654Clostridium novyi NT, complete genomeButyrate-acetoacetate CoA-transferase subunit B3e-37155
NC_004193:2692136:270086827008682701530663Oceanobacillus iheyensis HTE831, complete genomebutyate-acetoacetate CA-transferase large chain4e-37154
NC_015425:2144639:217876321787632179416654Clostridium botulinum BKT015925 chromosome, complete genome3-oxoacid CoA-transferase subunit B3e-37154
NC_011894:2359128:237904023790402379666627Methylobacterium nodulans ORS 2060, complete genome3-oxoacid CoA-transferase, B subunit2e-36152
NC_012779:2127542:212689521268952127545651Edwardsiella ictaluri 93-146, complete genomeacetate CoA-transferase subunit beta2e-36152
NC_015737:879545:879545879545880201657Clostridium sp. SY8519, complete genomehypothetical protein2e-36152
NC_017192:88940:101833101833102465633Arcobacter sp. L, complete genomeputative 3-oxoacid CoA-transferase beta subunit1e-35149
NC_010170:1470755:148115114811511481471321Bordetella petrii, complete genome3-oxoacid CoA-transferase subunit B, fragment2e-22105