Pre_GI: BLASTP Hits

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Query: NC_009512:3251545:3253810 Pseudomonas putida F1, complete genome

Start: 3253810, End: 3254592, Length: 783

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008601:753221:775195775195775911717Francisella tularensis subsp. novicida U112, complete genometranscriptional regulator, IclR family6e-29127
NC_015949:428923:438325438325439119795Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeIclR family transcriptional regulator2e-1479.7
NC_015949:47414:557195571956513795Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeIclR family transcriptional regulator2e-1479.7
NC_014721:2043910:204995520499552050749795Caldicellulosiruptor kristjanssonii 177R1B chromosome, completetranscriptional regulator, iclr family2e-1479.3
NC_010718:1229355:122935512293551230158804Natranaerobius thermophilus JW/NM-WN-LF, complete genometranscriptional regulator, IclR family5e-1478.2
NC_014657:2236193:225991522599152260712798Caldicellulosiruptor owensensis OL chromosome, complete genometranscriptional regulator, iclr family1e-1377
NC_014392:2311243:231796223179622318795834Caldicellulosiruptor obsidiansis OB47 chromosome, complete genometranscriptional regulator, IclR family3e-1375.5
NC_010997:830500:836841836841837644804Rhizobium etli CIAT 652 plasmid pC, complete sequenceputative transcriptional regulator protein, IclR family6e-1374.7
NC_015589:2447132:244890124489012449674774Desulfotomaculum ruminis DSM 2154 chromosome, complete genometranscriptional regulator IclR5e-1271.6
NC_007644:362000:379800379800380564765Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, IclR family1e-1170.5
NC_020911:3159290:317696631769663177724759Octadecabacter antarcticus 307, complete genomeIclR family transcriptional regulator2e-1170.1
NC_014206:1618988:162671116267111627487777Geobacillus sp. C56-T3 chromosome, complete genomeIclR family transcriptional regulator3e-1168.9
NC_015565:2027279:204943020494302050236807Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeIclR family transcriptional regulator3e-1168.9
NC_006510:1995916:201138620113862012162777Geobacillus kaustophilus HTA426, complete genometranscriptional regulator5e-1168.6
NC_015589:2281054:228220522822052283017813Desulfotomaculum ruminis DSM 2154 chromosome, complete genometranscriptional regulator IclR6e-1168.2
NC_020134:845164:851861851861852637777Clostridium stercorarium subsp. stercorarium DSM 8532, completepectin degradation repressor protein KdgR5e-1168.2
NC_013929:5850599:5866255586625558680181764Streptomyces scabiei 87.22 chromosome, complete genomeIclR family transcriptional regulator5e-1168.2
NC_013159:2913927:292611229261122926918807Saccharomonospora viridis DSM 43017, complete genometranscriptional regulator5e-1168.2
NC_016048:308342:343421343421344185765Oscillibacter valericigenes Sjm18-20, complete genomeputative IclR family transcriptional regulator5e-1168.2
NC_005126:142500:146503146503147273771Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein8e-1167.8
NC_016943:4194002:419849841984984199286789Blastococcus saxobsidens DD2, complete genomeputative HTH-type transcriptional repressor allR1e-1067.4
NC_016582:3563156:357822535782253578947723Streptomyces bingchenggensis BCW-1 chromosome, complete genometranscriptional regulator1e-1067
NC_016633:14000:329083290833870963Sphaerochaeta pleomorpha str. Grapes chromosome, complete genometranscriptional regulator1e-1067
NC_020908:823589:840435840435841193759Octadecabacter arcticus 238, complete genomeIclR family transcriptional regulator2e-1066.2
NC_008726:4725389:473456147345614735364804Mycobacterium vanbaalenii PYR-1, complete genomeregulatory proteins, IclR2e-1066.2
NC_015957:5310000:532864653286465329404759Streptomyces violaceusniger Tu 4113 chromosome, complete genomeIclR family transcriptional regulator2e-1066.2
NC_015850:2451957:247369824736982474504807Acidithiobacillus caldus SM-1 chromosome, complete genomeIclR family transcriptional regulator3e-1065.9
NC_012669:4118230:412893741289374129710774Beutenbergia cavernae DSM 12333, complete genometranscriptional regulator, IclR family3e-1065.9
NC_019978:2532640:254798025479802548762783Halobacteroides halobius DSM 5150, complete genometranscriptional regulator7e-1064.7
NC_015379:2505233:251805125180512518803753Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative transcription factor, IclR family8e-1064.3
NC_008148:792610:805439805439806221783Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, IclR family1e-0963.5
NC_003888:6853107:686865768686576869469813Streptomyces coelicolor A3(2), complete genometranscriptional regulator for glyoxylate bypass2e-0963.2
NC_013757:3012130:301834030183403019140801Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, IclR family2e-0962.8
NC_007164:1434305:143752414375241438258735Corynebacterium jeikeium K411, complete genomeputative transcriptional regulator (IclR family)4e-0962
NC_015588:475723:480113480113480886774Isoptericola variabilis 225 chromosome, complete genometranscriptional regulator, IclR family4e-0962
NC_007644:416000:418409418409419215807Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, IclR family5e-0961.6
NC_018000:1852691:187154618715461872355810Sinorhizobium fredii USDA 257 chromosome, complete genomeacetate operon repressor1e-0860.8
NC_018870:484000:489181489181489951771Thermacetogenium phaeum DSM 12270 chromosome, complete genomeHTH-type transcriptional regulator1e-0860.5
NC_012521:148886:165731165731166522792Rhodococcus opacus B4 plasmid pROB02, complete sequenceputative IclR family transcriptional regulator1e-0860.1
NC_009485:1222697:124249912424991243314816Bradyrhizobium sp. BTAi1 chromosome, complete genomeIclR family transcriptional regulator2e-0859.7
NC_016514:506611:509638509638510396759Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YagI2e-0859.3
NC_008269:868000:875184875184875957774Rhodococcus sp. RHA1 plasmid pRHL1, complete sequencetranscriptional regulator, IclR family3e-0858.9
NC_016943:1560000:156831215683121569094783Blastococcus saxobsidens DD2, complete genomeIclR family transcriptional regulator3e-0858.9
NC_015573:813000:839785839785840549765Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeIclR family transcriptional regulator4e-0858.5
NC_015563:5289875:531011553101155310942828Delftia sp. Cs1-4 chromosome, complete genomeIclR family transcriptional regulator5e-0858.5
NC_008687:229941:229941229941230696756Paracoccus denitrificans PD1222 chromosome 2, complete sequenceregulatory proteins, IclR6e-0858.2
NC_013740:2218215:222121422212142221993780Acidaminococcus fermentans DSM 20731, complete genometranscriptional regulator, IclR family5e-0858.2
NC_009921:3666898:368331936833193684122804Frankia sp. EAN1pec, complete genometranscriptional regulator, IclR family7e-0857.8
NC_021150:1322000:134735213473521348155804Azotobacter vinelandii CA6, complete genometranscriptional regulatory protein, IclR family8e-0857.8
NC_012560:1322000:134734013473401348143804Azotobacter vinelandii DJ, complete genometranscriptional regulatory protein, IclR family8e-0857.8
NC_014121:677799:677799677799678557759Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completephage predicted DNA-binding transcriptional regulator1e-0757.4
NC_012880:2425330:243403424340342434825792Dickeya dadantii Ech703, complete genometranscriptional regulator, IclR family1e-0757.4
NC_008593:640000:648290648290649051762Clostridium novyi NT, complete genometranscription regulator (IclR family) BH21371e-0757
NC_015732:684000:686748686748687509762Spirochaeta caldaria DSM 7334 chromosome, complete genomeIclR family transcriptional regulator1e-0757
NC_014652:163347:170037170037170810774Caldicellulosiruptor hydrothermalis 108 chromosome, completetranscriptional regulator, iclr family2e-0756.6
NC_012988:731790:737319737319738095777Methylobacterium extorquens DM4, complete genomeDNA-binding transcriptional repressor, IclR family2e-0756.2
NC_000913:272071:287628287628288386759Escherichia coli K12, complete genomeCP4-6 prophage; predicted DNA-binding transcriptional regulator2e-0756.2
AC_000091:273325:287628287628288386759Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator2e-0756.2
NC_013510:5394432:540096854009685401714747Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, IclR family2e-0756.2
NC_017955:3057592:306076030607603061566807Modestobacter marinus, complete genomeIclR family transcriptional regulator3e-0755.5
NC_014666:1601972:160197216019721602739768Frankia sp. EuI1c chromosome, complete genometranscriptional regulator, IclR family4e-0755.1
NC_015693:53196:579005790058637738Runella slithyformis DSM 19594 plasmid pRUNSL01, complete sequenceIclR family transcriptional regulator5e-0755.1
NC_009142:1701000:171626517162651717011747Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator, IclR family5e-0755.1
NC_010552:2454776:245477624547762455564789Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, IclR family7e-0754.7
NC_016604:3184855:322144832214483222197750Mycobacterium rhodesiae NBB3 chromosome, complete genometranscriptional regulator8e-0754.3
NC_004337:3590323:372325937232593724107849Shigella flexneri 2a str. 301, complete genomeputative regulator9e-0754.3
NC_016642:1990684:2006015200601520077391725Pseudovibrio sp. FO-BEG1 chromosome, complete genomeSMP-30/Gluconolaconase/LRE-like region9e-0753.9
NC_008596:4152916:416604641660464166819774Mycobacterium smegmatis str. MC2 155, complete genomeputative IclR family protein transcriptional regulator1e-0653.9
NC_013929:1670402:167536316753631676148786Streptomyces scabiei 87.22 chromosome, complete genometranscriptional regulator1e-0653.9
NC_016947:1480282:148352714835271484252726Mycobacterium intracellulare MOTT-02 chromosome, complete genomeregulatory protein, IclR1e-0653.5
NC_016943:1560000:157046615704661571323858Blastococcus saxobsidens DD2, complete genomeputative transcription regulator, IclR family2e-0653.1
CP002797:4603787:461008346100834610847765Escherichia coli NA114, complete genomePutative transcriptional regulator, IclR family3e-0652.4
NC_002678:5060670:507867250786725079481810Mesorhizobium loti MAFF303099, complete genomehypothetical protein3e-0652.4
NC_014974:1076565:109702010970201097802783Thermus scotoductus SA-01 chromosome, complete genomeIclR family transcriptional regulator4e-0652.4
NC_004310:1578918:159082515908251591646822Brucella suis 1330 chromosome I, complete sequencetranscriptional regulator, IclR family4e-0652
NC_010103:1577750:158965815896581590479822Brucella canis ATCC 23365 chromosome I, complete sequenceregulatory protein IclR4e-0652
NC_010167:1085106:109882010988201099641822Brucella suis ATCC 23445 chromosome II, complete sequencehypothetical protein4e-0652
NC_011894:6708970:671845467184546719275822Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, IclR family4e-0652
NC_012912:4071859:409679440967944097600807Dickeya zeae Ech1591, complete genometranscriptional regulator, IclR family4e-0652
NC_019962:1750497:176870817687081769508801Natrinema pellirubrum DSM 15624, complete genometranscriptional regulator4e-0652
NC_013729:4871430:488413648841364884891756Kribbella flavida DSM 17836, complete genometranscriptional regulator, IclR family4e-0652
NC_009512:5920960:593641859364185937254837Pseudomonas putida F1, complete genomeregulatory protein, IclR4e-0652
NC_013524:314814:320777320777321589813Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genometranscriptional regulator, IclR family4e-0652
NC_007963:317291:335808335808336599792Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, IclR family6e-0651.2
NC_020302:146807:162161162161162958798Corynebacterium halotolerans YIM 70093 = DSM 44683, completeIclR family transcriptional regulator6e-0651.2
NC_006932:1596732:160864116086411609462822Brucella abortus biovar 1 str. 9-941 chromosome I, completetranscriptional regulator, IclR family8e-0650.8
NC_007618:1593886:160579716057971606618822Brucella melitensis biovar Abortus 2308 chromosome I, completeBacterial regulatory proteins, IclR family8e-0650.8
NC_010742:1595065:160697416069741607795822Brucella abortus S19 chromosome 1, complete sequenceBacterial regulatory protein, IclR family8e-0650.8
NC_003317:392271:396715396715397536822Brucella melitensis 16M chromosome I, complete sequenceTRANSCRIPTIONAL REGULATOR, ICLR FAMILY8e-0650.8
NC_005773:3253575:327876932787693279608840Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional regulator, IclR family8e-0650.8
NC_007005:2686551:271373727137372714576840Pseudomonas syringae pv. syringae B728a, complete genomeregulatory proteins, IclR8e-0650.8
NC_018000:1914945:193426919342691935087819Sinorhizobium fredii USDA 257 chromosome, complete genomeregulatory protein, IclR1e-0550.8