Pre_GI: BLASTP Hits

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Query: NC_009512:3118907:3118907 Pseudomonas putida F1, complete genome

Start: 3118907, End: 3120721, Length: 1815

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:5421000:5435429543542954372371809Pseudomonas putida ND6 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase01170
NC_010571:3322467:3343870334387033482314362Opitutus terrae PB90-1, complete genomePAS/PAC sensor signal transduction histidine kinase3e-71270
NC_010571:3322467:3340109334010933438733765Opitutus terrae PB90-1, complete genomePAS/PAC sensor signal transduction histidine kinase5e-63242
NC_014623:1633889:1649426164942616506851260Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesignal transduction histidine kinase-like protein5e-51202
NC_016830:6589575:660461366046136605572960Pseudomonas fluorescens F113 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase3e-49197
NC_016830:6589575:660224766022476602600354Pseudomonas fluorescens F113 chromosome, complete genomesensor histidine kinase4e-22107
NC_015723:280368:3037783037783092855508Cupriavidus necator N-1 chromosome 2, complete sequencenodulation protein NodV6e-1583.2
NC_014623:6509000:6509043650904365103711329Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesensor protein5e-1376.6
NC_004463:1872537:1879666187966618823352670Bradyrhizobium japonicum USDA 110, complete genometwo component regulator1e-1275.5
NC_017249:8358438:8372414837241483748162403Bradyrhizobium japonicum USDA 6, complete genometwo component regulator1e-1275.1
NC_017249:263873:2751592751592777052547Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein7e-1272.8
NC_017986:5421000:5437234543723454386371404Pseudomonas putida ND6 chromosome, complete genomeresponse regulator receiver sensor signal transduction histidine kinase8e-1272.4
NC_015675:4526500:4538364453836445414443081Mesorhizobium opportunistum WSM2075 chromosome, complete genomemulti-sensor signal transduction histidine kinase1e-1172.4
NC_002939:1021297:1036181103618110381481968Geobacter sulfurreducens PCA, complete genomesensor histidine kinase2e-1068.2
NC_009512:3118907:3117507311750731189101404Pseudomonas putida F1, complete genomeresponse regulator receiver sensor signal transduction histidine kinase3e-1067
NC_014314:238043:2791912791912807111521Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completePAS/PAC sensor signal transduction histidine kinase4e-1067
NC_014623:5350116:5368481536848153706552175Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesensor protein5e-1066.6
NC_021184:3571014:3594465359446535960631599Desulfotomaculum gibsoniae DSM 7213, complete genomehistidine kinase,PAS domain-containing protein,histidine kinase,GAF domain-containing protein1e-0965.5
NC_011601:1039500:1040690104069010434222733Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehybrid sensory histidine kinase TorS1e-0965.5
NC_014623:8648000:8664533866453386681713639Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesensor protein1e-0965.1
NC_008609:708886:7379777379777401932217Pelobacter propionicus DSM 2379, complete genomemulti-sensor signal transduction histidine kinase1e-0965.1
NC_011002:772243:7722437722437741411899Burkholderia cenocepacia J2315 chromosome 3, complete sequencetwo-component regulatory system, sensor kinase protein3e-0964.3
NC_015675:4526500:4532750453275045363103561Mesorhizobium opportunistum WSM2075 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase3e-0963.9
NC_010524:4402478:4402478440247844046102133Leptothrix cholodnii SP-6, complete genomePAS/PAC sensor signal transduction histidine kinase3e-0963.9
NC_011979:3880488:3890294389029438915861293Geobacter sp. FRC-32, complete genomehistidine kinase4e-0963.9
NC_015276:1531159:1547519154751915491351617Marinomonas mediterranea MMB-1 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase8e-0962.8
NC_013890:808791:8152388152388190263789Dehalococcoides sp. GT chromosome, complete genomePAS/PAC sensor hybrid histidine kinase3e-0860.8
NC_010814:1390817:1410561141056114127742214Geobacter lovleyi SZ, complete genomemulti-sensor signal transduction histidine kinase5e-0860.1
NC_012796:4693500:4693542469354246964812940Desulfovibrio magneticus RS-1, complete genomesensor histidine kinase5e-0860.1
NC_017059:2084500:2087696208769620909383243Rhodospirillum photometricum DSM 122, complete genomeSensor protein6e-0859.7
NC_008825:846916:8525408525408554672928Methylibium petroleiphilum PM1, complete genomeosmosensitive K+ channel histidine kinase-like protein8e-0859.3
NC_008609:2933468:2949817294981729522552439Pelobacter propionicus DSM 2379, complete genomePAS/PAC sensor hybrid histidine kinase9e-0859.3
NC_014206:2941575:2952401295240129540411641Geobacillus sp. C56-T3 chromosome, complete genomeGAF sensor signal transduction histidine kinase9e-0859.3
NC_009485:7827782:7833542783354278347621221Bradyrhizobium sp. BTAi1 chromosome, complete genomesensor histidine kinase with ATP-binding region1e-0758.9
NC_009656:2663387:2666458266645826677951338Pseudomonas aeruginosa PA7 chromosome, complete genomesensor histidine kinase1e-0758.9
NC_011894:200928:2179822179822207052724Methylobacterium nodulans ORS 2060, complete genomeosmosensitive K+ channel signal transduction histidine kinase1e-0758.9
NC_011979:3341099:3367401336740133690231623Geobacter sp. FRC-32, complete genomehistidine kinase1e-0758.5
NC_007626:1091000:1105968110596811082922325Magnetospirillum magneticum AMB-1, complete genomeSignal transduction histidine kinase1e-0758.5
NC_014972:2659388:2703629270362927054671839Desulfobulbus propionicus DSM 2032 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase1e-0758.5
NC_014365:2888897:2908495290849529110112517Desulfarculus baarsii DSM 2075 chromosome, complete genomesignal transduction histidine kinase, nitrogen specific, NtrB1e-0758.5
NC_011979:3880488:3895400389540038988523453Geobacter sp. FRC-32, complete genomemulti-sensor signal transduction histidine kinase2e-0758.2
NC_009437:1481064:1495766149576614970851320Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeresponse regulator receiver sensor signal transduction histidine kinase2e-0758.2
NC_015675:4493758:4512888451288845184165529Mesorhizobium opportunistum WSM2075 chromosome, complete genomemulti-sensor signal transduction multi-kinase2e-0757.8
NC_012559:2309566:2331455233145523325371083Laribacter hongkongensis HLHK9, complete genomePAS/PAC domain protein3e-0757.4
NC_016024:1472421:1472421147242114753782958Candidatus Chloracidobacterium thermophilum B chromosome chromosomePAS domain S-box protein3e-0757.4
NC_012918:2758775:2758775275877527622153441Geobacter sp. M21 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase3e-0757.4
NC_011060:1898224:1926795192679519293442550Pelodictyon phaeoclathratiforme BU-1, complete genomePAS/PAC sensor signal transduction histidine kinase7e-0756.2
NC_006510:746814:7550037550037566431641Geobacillus kaustophilus HTA426, complete genomehypothetical protein7e-0756.2
NC_016593:762216:7703257703257719651641Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeGAF sensor signal transduction histidine kinase7e-0756.2
NC_020304:129321:1431241431241457452622Desulfocapsa sulfexigens DSM 10523, complete genomePAS domain S-box6e-0756.2
NC_013595:9651019:9672189967218996739701782Streptosporangium roseum DSM 43021, complete genomeHistidine kinase6e-0756.2
NC_011296:102650:1272081272081291421935Thermodesulfovibrio yellowstonii DSM 11347, complete genomesensor histidine kinase8e-0755.8
NC_014623:5661108:5679531567953156822302700Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesensor protein9e-0755.8
NC_014355:3248386:3248386324838632515623177Candidatus Nitrospira defluvii, complete genomeputative histidine kinase1e-0655.8
NC_010320:819326:8276108276108289921383Thermoanaerobacter sp. X514 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase1e-0655.5
NC_007348:752692:7526927526927546111920Ralstonia eutropha JMP134 chromosome 2, complete sequencePAS1e-0655.5
NC_014844:2828370:2846565284656528477011137Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeresponse regulator receiver1e-0655.5
NC_010505:5525461:5540340554034055425082169Methylobacterium radiotolerans JCM 2831, complete genomeintegral membrane sensor hybrid histidine kinase2e-0654.7
NC_011992:3752867:3761753376175337628261074Acidovorax ebreus TPSY, complete genomehistidine kinase2e-0654.3
NC_014844:3582677:3597503359750335995692067Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeATPase ATP-binding domain-containing protein3e-0654.3
NC_012108:1324885:1341364134136413425901227Desulfobacterium autotrophicum HRM2, complete genomeputative response regulator protein3e-0654.3
NC_009092:3682413:3695449369544936974131965Shewanella loihica PV-4, complete genomehistidine kinase4e-0653.9
NC_009483:2086021:2086021208602120876071587Geobacter uraniireducens Rf4 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase4e-0653.9
NC_007413:4278252:4297741429774143003382598Anabaena variabilis ATCC 29413, complete genomePAS/PAC Sensor Hybrid Histidine Kinase4e-0653.9
NC_014217:1352777:1364021136402113662822262Starkeya novella DSM 506 chromosome, complete genomemulti-sensor signal transduction histidine kinase4e-0653.9
NC_007946:3683371:3703026370302637044021377Escherichia coli UTI89, complete genomesensor protein ZraS3e-0653.9
NC_013093:2599591:2617931261793126195711641Actinosynnema mirum DSM 43827, complete genomePAS/PAC sensor hybrid histidine kinase3e-0653.9
NC_014118:2369669:2386536238653623921095574Burkholderia sp. CCGE1002 chromosome chromosome 2, completemulti-sensor signal transduction multi-kinase3e-0653.9
NC_014623:4535544:4551052455105245532982247Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesensor protein3e-0653.9
NC_008609:3732192:3765140376514037705065367Pelobacter propionicus DSM 2379, complete genomePAS sensor protein4e-0653.5
NC_015565:1281397:1282736128273612842921557Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeintegral membrane sensor signal transduction histidine kinase4e-0653.5
NC_012881:2405414:2405414240541424069101497Desulfovibrio salexigens DSM 2638, complete genomePAS/PAC sensor signal transduction histidine kinase9e-0652.4
NC_010505:5967324:5989118598911859911602043Methylobacterium radiotolerans JCM 2831, complete genomeintegral membrane sensor signal transduction histidine kinase9e-0652.4