Pre_GI: BLASTP Hits

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Query: NC_009512:2238437:2262168 Pseudomonas putida F1, complete genome

Start: 2262168, End: 2262518, Length: 351

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020209:1903830:1920733192073319224031671Pseudomonas poae RE*1-1-14, complete genomeputative two-component sensor histidine kinase2e-1787.8
NC_011071:1178423:1178423117842311804922070Stenotrophomonas maltophilia R551-3, complete genomePAS/PAC sensor hybrid histidine kinase4e-1786.7
NC_012988:769981:8362228362228394193198Methylobacterium extorquens DM4, complete genomesensor hybrid histidine kinase with multiple PAS/PAC and response regulator receiver domains6e-1785.9
NC_010172:798923:8596738596738628703198Methylobacterium extorquens PA1, complete genomePAS sensor protein7e-1785.9
NC_016010:1822212:1902046190204619041182073Xanthomonas axonopodis pv. citrumelo F1 chromosome, completehistidine kinase-response regulator hybrid protein4e-1683.6
NC_017249:2073558:2073998207399820757671770Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein4e-1683.2
NC_011757:4293000:4334529433452943362501722Methylobacterium chloromethanicum CM4, complete genomePAS/PAC sensor hybrid histidine kinase8e-1682.4
NC_011757:3486283:3524427352442735276243198Methylobacterium chloromethanicum CM4, complete genomePAS/PAC sensor hybrid histidine kinase1e-1581.6
NC_014006:611592:6125216125216145842064Sphingobium japonicum UT26S chromosome 1, complete genomesignal transduction histidine kinase4e-1580.1
NC_010172:798923:8172928172928189051614Methylobacterium extorquens PA1, complete genomeATP-binding region ATPase domain protein7e-1579.3
NC_011757:517000:5364535364535397223270Methylobacterium chloromethanicum CM4, complete genomemulti-sensor hybrid histidine kinase2e-1478.2
NC_010172:480000:4827384827384864153678Methylobacterium extorquens PA1, complete genomePAS sensor protein2e-1477.8
NC_011146:482440:5050885050885079552868Geobacter bemidjiensis Bem, complete genomemulti-sensor hybrid histidine kinase6e-1476.3
NC_013223:1090397:1100795110079511030052211Desulfohalobium retbaense DSM 5692, complete genomePAS/PAC sensor hybrid histidine kinase1e-1375.5
NC_011757:3486283:3521250352125035240782829Methylobacterium chloromethanicum CM4, complete genomePAS/PAC sensor hybrid histidine kinase9e-1475.5
NC_011757:39881:4793747937503692433Methylobacterium chloromethanicum CM4, complete genomePAS/PAC sensor hybrid histidine kinase2e-1374.3
NC_012811:959725:973030973030973848819Methylobacterium extorquens AM1 megaplasmid, complete sequencehypothetical protein2e-1374.3
NC_014924:2517068:2518503251850325204191917Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase2e-1374.3
NC_016010:1822212:1896930189693018997852856Xanthomonas axonopodis pv. citrumelo F1 chromosome, completesensory box histidine kinase/response regulator hybrid4e-1373.2
NC_017249:4365935:4380207438020743825702364Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-1272
NC_011757:5742290:5768649576864957713212673Methylobacterium chloromethanicum CM4, complete genomemulti-sensor hybrid histidine kinase2e-1271.2
NC_002939:2617037:2634831263483126378783048Geobacter sulfurreducens PCA, complete genomesensory box histidine kinase/response regulator3e-1270.9
NC_016010:1822212:189990018999001900274375Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeresponse regulator2e-1270.9
NC_020209:2838582:2838582283858228424063825Pseudomonas poae RE*1-1-14, complete genomesensor histidine kinase5e-1269.7
NC_006833:902744:9236259236259261052481Wolbachia endosymbiont strain TRS of Brugia malayi, completeMembrane associated signal transduction histidine kinase and receiver domain6e-1269.7
NC_012988:1817000:1843203184320318447081506Methylobacterium extorquens DM4, complete genomehybrid histidine kinase7e-1269.3
NC_007512:944941:9678019678019698972097Pelodictyon luteolum DSM 273, complete genomePAS/PAC sensor hybrid histidine kinase3e-1167.4
NC_007951:2045830:2054351205435120567202370Burkholderia xenovorans LB400 chromosome 1, complete sequencePAS/PAC Sensor Hybrid Histidine Kinase3e-1167
NC_015740:3678342:371320437132043713704501Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein4e-1166.6
NC_012108:4417483:4431023443102344335002478Desulfobacterium autotrophicum HRM2, complete genometwo-component sensory box histidine kinase/response regulator5e-1166.2
NC_008609:1976403:2056927205692720599112985Pelobacter propionicus DSM 2379, complete genomemulti-sensor hybrid histidine kinase7e-1165.9
NC_017249:7917586:7930165793016579321591995Bradyrhizobium japonicum USDA 6, complete genometwo-component hybrid sensor and regulator1e-1065.5
NC_004463:2344128:2350024235002423519281905Bradyrhizobium japonicum USDA 110, complete genometwo-component hybrid sensor and regulator1e-1065.5
NC_012108:4387331:4402270440227044053743105Desulfobacterium autotrophicum HRM2, complete genometwo domain fusion protein (N:Methyl-accepting chemotaxis protein-C:sensory box histidine kinase/response regulator)2e-1064.3
NC_015672:788417:8056028056028075241923Flexistipes sinusarabici DSM 4947 chromosome, complete genomemulti-sensor hybrid histidine kinase3e-1063.9
NC_011894:6259649:6272210627221062742312022Methylobacterium nodulans ORS 2060, complete genomePAS/PAC sensor hybrid histidine kinase3e-1063.5
NC_017249:7917586:7926765792676579284471683Bradyrhizobium japonicum USDA 6, complete genometwo-component hybrid sensor and regulator4e-1063.5
NC_004463:2344128:2353736235373623554181683Bradyrhizobium japonicum USDA 110, complete genometwo-component hybrid sensor and regulator5e-1063.2
NC_015376:3249773:3264864326486432672962433Burkholderia gladioli BSR3 chromosome chromosome 2, completesensory box sensor histidine kinase/response regulator5e-1063.2
NC_010725:4035397:4040090404009040425132424Methylobacterium populi BJ001, complete genomemulti-sensor hybrid histidine kinase6e-1062.8
NC_011894:3623500:3624775362477536267631989Methylobacterium nodulans ORS 2060, complete genomePAS/PAC sensor hybrid histidine kinase6e-1062.8
NC_013093:2599591:2617931261793126195711641Actinosynnema mirum DSM 43827, complete genomePAS/PAC sensor hybrid histidine kinase8e-1062.4
NC_010505:5525461:5554984555498455578242841Methylobacterium radiotolerans JCM 2831, complete genomemulti-sensor hybrid histidine kinase1e-0962
NC_011146:2485625:2485625248562524894073783Geobacter bemidjiensis Bem, complete genomemulti-sensor hybrid histidine kinase1e-0962
NC_010505:5525461:5540340554034055425082169Methylobacterium radiotolerans JCM 2831, complete genomeintegral membrane sensor hybrid histidine kinase3e-0960.8
NC_009485:7021228:704724970472497047653405Bradyrhizobium sp. BTAi1 chromosome, complete genometwo-component response regulator2e-0960.8
NC_008536:8541267:855800685580068558437432Solibacter usitatus Ellin6076, complete genomeresponse regulator receiver protein2e-0960.8
NC_011027:817311:8281228281228305182397Chlorobaculum parvum NCIB 8327, complete genomemulti-sensor hybrid histidine kinase3e-0960.5
NC_012808:3711806:3728812372881237304761665Methylobacterium extorquens AM1, complete genome6e-0959.3
NC_010172:3712000:3725376372537637274122037Methylobacterium extorquens PA1, complete genomePAS sensor protein8e-0959.3
NC_011757:39881:6236162361648742514Methylobacterium chloromethanicum CM4, complete genomemulti-sensor hybrid histidine kinase1e-0858.9
NC_010505:5525461:5537500553750055396112112Methylobacterium radiotolerans JCM 2831, complete genomePAS/PAC sensor hybrid histidine kinase1e-0858.9
NC_012988:4075429:4091338409133840933351998Methylobacterium extorquens DM4, complete genomesensor hybrid histidine kinase with multiple PAS and response regulator receiver domains9e-0958.9
NC_005956:818000:839062839062839424363Bartonella henselae str. Houston-1, complete genomeResponse regulator8e-0958.9
NC_012918:1660477:1683690168369016861222433Geobacter sp. M21 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase1e-0858.2
NC_014972:1923035:1935850193585019381862337Desulfobulbus propionicus DSM 2032 chromosome, complete genomemulti-sensor hybrid histidine kinase2e-0858.2
NC_011894:6708970:6710443671044367124251983Methylobacterium nodulans ORS 2060, complete genomePAS/PAC sensor hybrid histidine kinase2e-0858.2
NC_012988:347500:348595348595348990396Methylobacterium extorquens DM4, complete genomeresponse regulator2e-0858.2
NC_012918:1814000:183116018311601831861702Geobacter sp. M21 chromosome, complete genomeXRE family transcriptional regulator2e-0858.2
NC_010505:2657683:266680126668012667211411Methylobacterium radiotolerans JCM 2831, complete genomeresponse regulator receiver protein2e-0857.8
NC_014924:2399524:2397876239787623995371662Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomehistidine kinase4e-0857
NC_012811:62867:722607226072817558Methylobacterium extorquens AM1 megaplasmid, complete sequenceSignal receiver domain protein4e-0856.6
NC_013223:1090397:1110149111014911125602412Desulfohalobium retbaense DSM 5692, complete genomePAS/PAC sensor hybrid histidine kinase4e-0856.6
NC_008554:2308500:2324965232496523268241860Syntrophobacter fumaroxidans MPOB, complete genomeintegral membrane sensor hybrid histidine kinase4e-0856.6
NC_007406:632436:649847649847650239393Nitrobacter winogradskyi Nb-255, complete genomeresponse regulator receiver5e-0856.6
NC_010725:4035397:4037751403775140398772127Methylobacterium populi BJ001, complete genomeintegral membrane sensor hybrid histidine kinase9e-0855.8
NC_016626:1669477:1672272167227216739901719Burkholderia sp. YI23 plasmid byi_1p, complete sequenceputative sensor histidine kinase/response regulator8e-0855.8
NC_011060:1746000:1749068174906817524153348Pelodictyon phaeoclathratiforme BU-1, complete genomePAS/PAC sensor hybrid histidine kinase8e-0855.8
NC_010505:3376322:3394677339467733967672091Methylobacterium radiotolerans JCM 2831, complete genomePAS/PAC sensor hybrid histidine kinase1e-0755.1
NC_011757:3540992:3552751355275135544931743Methylobacterium chloromethanicum CM4, complete genomehistidine kinase1e-0755.1
NC_011757:5048714:5074765507476550768222058Methylobacterium chloromethanicum CM4, complete genomehistidine kinase1e-0755.1
NC_010172:3712000:372749337274933727873381Methylobacterium extorquens PA1, complete genomeresponse regulator receiver1e-0755.1
NC_007964:717590:735123735123735506384Nitrobacter hamburgensis X14, complete genomeresponse regulator receiver domain protein (CheY-like)2e-0754.7
NC_020304:129321:1457451457451478982154Desulfocapsa sulfexigens DSM 10523, complete genomePAS domain S-box2e-0754.3
NC_020209:1903830:191001719100171910394378Pseudomonas poae RE*1-1-14, complete genomeresponse regulator2e-0754.3
NC_009445:1453132:145313214531321453536405Bradyrhizobium sp. ORS 278 chromosome, complete genometwo-component response regulator2e-0754.3
NC_020304:129321:1431241431241457452622Desulfocapsa sulfexigens DSM 10523, complete genomePAS domain S-box3e-0753.9
NC_017249:1476500:148688714868871487303417Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein4e-0753.5
NC_007912:2768363:2786848278684827883411494Saccharophagus degradans 2-40, complete genomediguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)4e-0753.5
NC_010511:5169338:5182175518217551842262052Methylobacterium sp. 4-46 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase4e-0753.5
NC_010322:3315024:334008633400863340448363Pseudomonas putida GB-1 chromosome, complete genomeresponse regulator receiver protein4e-0753.5
NC_004129:5373886:545217354521735452583411Pseudomonas fluorescens Pf-5, complete genomeresponse regulator5e-0753.1
NC_009485:1487485:148996214899621490321360Bradyrhizobium sp. BTAi1 chromosome, complete genomeresponse regulator receiver5e-0753.1
NC_002939:1634843:1640718164071816420941377Geobacter sulfurreducens PCA, complete genomesigma-54 dependent DNA-binding response regulator6e-0752.8
NC_014972:2771902:2776933277693327799383006Desulfobulbus propionicus DSM 2032 chromosome, complete genomemulti-sensor hybrid histidine kinase6e-0752.8
NC_019903:3537545:355704135570413557397357Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains7e-0752.8
NC_012918:1814000:1823304182330418264473144Geobacter sp. M21 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase8e-0752.4
NC_013730:58840:7217372173735131341Spirosoma linguale DSM 74, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family1e-0652
NC_017030:4062699:4084425408442540859541530Corallococcus coralloides DSM 2259 chromosome, complete genomesensor histidine kinase/response regulator1e-0652
NC_014759:1999000:200515420051542005837684Marivirga tractuosa DSM 4126 chromosome, complete genometwo component transcriptional regulator, winged helix family1e-0652
NC_020304:1097478:1111644111164411139682325Desulfocapsa sulfexigens DSM 10523, complete genomePAS domain S-box1e-0651.6
NC_009952:1680682:1705935170593517082742340Dinoroseobacter shibae DFL 12, complete genomehistidine kinase1e-0651.6
NC_013223:1349000:1352416135241613546922277Desulfohalobium retbaense DSM 5692, complete genomePAS/PAC sensor hybrid histidine kinase1e-0651.6
NC_015976:3118804:313939631393963139773378Sphingobium sp. SYK-6, complete genomeresponse regulator receiver protein1e-0651.6
NC_010511:3160123:3164569316456931677423174Methylobacterium sp. 4-46 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase1e-0651.6
NC_011146:3089297:3089297308929730924403144Geobacter bemidjiensis Bem, complete genomePAS/PAC sensor hybrid histidine kinase2e-0651.6
NC_009654:4716417:475201847520184752752735Marinomonas sp. MWYL1, complete genometwo component transcriptional regulator2e-0651.2
NC_007761:3047321:305125730512573051790534Rhizobium etli CFN 42, complete genomeprobable two-component response regulator protein2e-0651.2
NC_015966:2337833:2370093237009323715231431Rhodothermus marinus SG0.5JP17-172 chromosome, complete genometwo component, sigma54 specific, Fis family transcriptional regulator2e-0650.8
NC_018645:4879931:4900050490005049038533804Desulfobacula toluolica Tol2, complete genometwo component system sensor histidine kinase, hybrid2e-0650.8
NC_011979:3712845:3723132372313237245051374Geobacter sp. FRC-32, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family3e-0650.8
NC_012660:5571500:558993655899365590346411Pseudomonas fluorescens SBW25 chromosome, complete genomeputative two-component system response regulator3e-0650.8
NC_017249:4398000:440589244058924406293402Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein4e-0650.4
NC_010622:249625:2517062517062530641359Burkholderia phymatum STM815 chromosome 1, complete sequencetwo component, sigma54 specific, transcriptional regulator, Fis family3e-0650.4
NC_011146:3376816:3393758339375833975973840Geobacter bemidjiensis Bem, complete genomemulti-sensor hybrid histidine kinase3e-0650.4
NC_010511:7024412:705057470505747050954381Methylobacterium sp. 4-46 chromosome, complete genomeresponse regulator receiver protein3e-0650.4
NC_012108:1324885:134062313406231341312690Desulfobacterium autotrophicum HRM2, complete genomesensory histidine kinase6e-0649.7
NC_014640:4532095:453331345333134533702390Achromobacter xylosoxidans A8 chromosome, complete genomeresponse regulator 126e-0649.7
NC_010382:1020516:103750010375001037859360Lysinibacillus sphaericus C3-41, complete genomesporulation initiation phosphotransferase F6e-0649.7
NC_014314:238043:278609278609279148540Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeresponse regulator receiver protein7e-0649.3
NC_017249:4398000:440630244063024406664363Bradyrhizobium japonicum USDA 6, complete genometwo-component response regulator7e-0649.3
NC_010505:5525461:5546057554605755497313675Methylobacterium radiotolerans JCM 2831, complete genomemulti-sensor hybrid histidine kinase7e-0649.3
NC_021175:1635796:165878716587871659473687Streptococcus oligofermentans AS 1.3089, complete genometwo-component response transcriptional regulator6e-0649.3
NC_009483:1551040:156645515664551566823369Geobacter uraniireducens Rf4 chromosome, complete genomeresponse regulator receiver protein8e-0648.9
NC_015732:91816:990859908599813729Spirochaeta caldaria DSM 7334 chromosome, complete genomeresponse regulator receiver protein9e-0648.9
NC_010505:5525461:5552538555253855544541917Methylobacterium radiotolerans JCM 2831, complete genomehistidine kinase9e-0648.9
NC_011146:3426500:3428824342882434314332610Geobacter bemidjiensis Bem, complete genomemulti-sensor hybrid histidine kinase1e-0548.9
NC_014926:795549:800387800387800788402Thermovibrio ammonificans HB-1 chromosome, complete genomeresponse regulator receiver protein1e-0548.9