Pre_GI: BLASTP Hits

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Query: NC_009512:1691930:1699466 Pseudomonas putida F1, complete genome

Start: 1699466, End: 1700380, Length: 915

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010501:4080937:409366540936654094579915Pseudomonas putida W619, complete genomeD-alanine--D-alanine ligase1e-154545
NC_017986:4374979:438282143828214383429609Pseudomonas putida ND6 chromosome, complete genomeD-alanine--D-alanine ligase3e-115414
NC_012658:545840:545840545840546742903Clostridium botulinum Ba4 str. 657 chromosome, complete genomeD-alanine--D-alanine ligase5e-50198
NC_004557:691944:700107700107701012906Clostridium tetani E88, complete genomeD-alanylalanine synthetase2e-48192
NC_013960:489616:505979505979506929951Nitrosococcus halophilus Nc4 chromosome, complete genomeD-alanine/D-alanine ligase2e-43176
NC_014315:226693:238426238426239376951Nitrosococcus watsoni C-113 chromosome, complete genomeD-alanine/D-alanine ligase3e-42172
NC_014926:795549:809812809812810690879Thermovibrio ammonificans HB-1 chromosome, complete genomeD-alanine/D-alanine ligase2e-41169
NC_013192:1824174:184599818459981846924927Leptotrichia buccalis DSM 1135, complete genomeD-alanine/D-alanine ligase4e-41168
NC_012560:1260031:129148412914841292431948Azotobacter vinelandii DJ, complete genomeD-alanine--D-alanine ligase5e-41168
NC_007484:3231937:323668632366863237636951Nitrosococcus oceani ATCC 19707, complete genomeD-alanine--D-alanine ligase7e-41167
NC_000918:336232:354044354044354919876Aquifex aeolicus VF5, complete genomeD-alanine:D-alanine ligase4e-40165
NC_014117:2684631:270091427009142701870957Burkholderia sp. CCGE1002 chromosome chromosome 1, completeD-alanine/D-alanine ligase4e-39162
NC_016632:230500:247098247098248018921Serratia symbiotica str. 'Cinara cedri' chromosome, completeD-alanine--D-alanine ligase4e-39161
NC_009654:2940278:295368329536832954636954Marinomonas sp. MWYL1, complete genomeD-alanine--D-alanine ligase2e-38159
NC_015587:114684:126297126297127163867Hydrogenobaculum sp. SHO chromosome, complete genomeD-alanine--D-alanine ligase4e-38158
NC_015557:114648:126261126261127127867Hydrogenobaculum sp. 3684 chromosome, complete genomeD-alanine/D-alanine ligase4e-38158
NC_020411:114683:126296126296127162867Hydrogenobaculum sp. HO, complete genomeD-alanine--D-alanine ligase4e-38158
NC_015276:2769000:278441127844112785358948Marinomonas mediterranea MMB-1 chromosome, complete genomeD-alanine--D-alanine ligase7e-38157
NC_004061:237205:236288236288237208921Buchnera aphidicola str. Sg (Schizaphis graminum), complete genomeD-alanine--D-alanine ligase1e-36153
NC_013165:3146000:315424131542413155194954Slackia heliotrinireducens DSM 20476, complete genomeD-alanine--D-alanine ligase5e-36151
NC_013204:3613824:362338536233853624308924Eggerthella lenta DSM 2243, complete genomeD-alanine/D-alanine ligase2e-35150
NC_018697:361339:379691379691380629939Cycloclasticus sp. P1 chromosome, complete genomeD-alanine--D-alanine ligase B2e-35149
NC_015389:2101841:210822621082262109182957Coriobacterium glomerans PW2 chromosome, complete genomeD-alanine--D-alanine ligase3e-34145
NC_009614:769851:777620777620778594975Bacteroides vulgatus ATCC 8482 chromosome, complete genomeD-alanyl-alanine synthetase A9e-34144
NC_012108:1067876:106787610678761068805930Desulfobacterium autotrophicum HRM2, complete genomeDdlA2e-31136
NC_017093:8757291:876198787619878762958972Actinoplanes missouriensis 431, complete genomeputative D-alanine--D-alanine ligase7e-30131
NS_000191:923949:934409934409935329921Uncultured Termite group 1 bacterium phylotype Rs-D17, completeD-alanine-D-alanine ligase5e-30131
NC_020419:923949:934409934409935329921Uncultured Termite group 1 bacterium phylotype Rs-D17 DNA, completeD-alanine-D-alanine ligase5e-30131
NC_010001:109893:1128921128921139141023Clostridium phytofermentans ISDg, complete genomeD-alanine--D-alanine ligase2e-29129
NC_017059:3163319:318581131858113186725915Rhodospirillum photometricum DSM 122, complete genomeD-alanine--D-alanine ligase3e-29129
NC_012781:2802000:2820759282075928218681110Eubacterium rectale ATCC 33656, complete genomeD-alanine--D-alanine ligase3e-29129
NC_003454:2113464:213488621348862135749864Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeD-alanine--D-alanine ligase4e-29128
NC_014039:2479500:248121424812142482161948Propionibacterium acnes SK137 chromosome, complete genomeD-ala D-ala ligase N-terminal domain protein8e-29127
NC_011027:858565:8799098799098810031095Chlorobaculum parvum NCIB 8327, complete genomeD-alanine/D-alanine ligase8e-29127
NC_015660:3643370:3643370364337036444641095Geobacillus thermoglucosidasius C56-YS93 chromosome, completeD-alanine/D-alanine ligase2e-28126
NC_014363:2035141:326132614253993Olsenella uli DSM 7084 chromosome, complete genomeD-alanine--D-alanine ligase4e-28125
NC_016512:2506898:250862625086262509573948Propionibacterium acnes TypeIA2 P.acn17 chromosome, completeD-alanine--D-alanine ligase6e-28124
NC_016511:2482500:248450624845062485453948Propionibacterium acnes TypeIA2 P.acn31 chromosome, completeD-alanine--D-alanine ligase6e-28124
NC_016516:2473500:247532724753272476310984Propionibacterium acnes TypeIA2 P.acn33 chromosome, completeD-alanine--D-alanine ligase6e-28124
NC_006085:2544421:254611325461132547096984Propionibacterium acnes KPA171202, complete genomeD-alanine--D-alanine ligase B6e-28124
NC_011898:301963:3213603213603224901131Clostridium cellulolyticum H10, complete genomeD-alanine/D-alanine ligase5e-27121
NC_004578:4708220:4712006471200647130971092Pseudomonas syringae pv. tomato str. DC3000, complete genomeD-alanylalanine synthetase8e-27120
NC_010981:425387:428816428816429769954Wolbachia pipientis, complete genomeD-alanine--D-alanine ligase2e-26119
NC_013595:10329633:103311371033113710332093957Streptosporangium roseum DSM 43021, complete genomeD-alanine--D-alanine ligase2e-26119
NC_007880:1830803:184313018431301844020891Francisella tularensis subsp. holarctica, complete genomeD-alanine--D-alanine ligase B6e-26118
NC_008278:6279553:6296488629648862975911104Frankia alni ACN14a, complete genomeD-alanine-D-alanine ligase A1e-25117
NC_004193:1335626:1350503135050313516031101Oceanobacillus iheyensis HTE831, complete genomeD-alanylalanine synthetase1e-25117
NC_009749:1825453:183778018377801838670891Francisella tularensis subsp. holarctica FTA, complete genomeD-alanine--D-alanine ligase7e-26117
NC_008369:1830442:184277118427711843661891Francisella tularensis subsp. holarctica OSU18, complete genomeD-alanine--D-alanine ligase7e-26117
NC_008601:168063:175050175050175940891Francisella tularensis subsp. novicida U112, complete genomeD-alanine-D-alanine ligase B7e-26117
NC_011661:961129:980590980590981525936Dictyoglomus turgidum DSM 6724, complete genomeD-alanine/D-alanine ligase2e-25116
NC_011297:787932:809763809763810698936Dictyoglomus thermophilum H-6-12, complete genomeD-alanine--D-alanine ligase5e-25115
NC_013521:4240468:424536642453664246319954Sanguibacter keddieii DSM 10542, complete genomeD-alanine--D-alanine ligase4e-24112
NC_016641:2476634:2493224249322424943121089Paenibacillus terrae HPL-003 chromosome, complete genomeD-alanine--D-alanine ligase6e-24111
NC_014562:2871765:2888161288816128892581098Pantoea vagans C9-1 chromosome, complete genomeD-alanine-D-alanine ligase A1e-23110
NC_009921:8717659:8717659871765987187051047Frankia sp. EAN1pec, complete genomeD-alanine--D-alanine ligase2e-23110
NC_015500:2197000:2214839221483922159601122Treponema brennaborense DSM 12168 chromosome, complete genomeD-alanine--D-alanine ligase2e-23109
NC_011830:2901346:2918089291808929191741086Desulfitobacterium hafniense DCB-2, complete genomeD-alanine/D-alanine ligase5e-23108
NC_020300:1041523:105161910516191052545927Bartonella australis Aust/NH1, complete genomeD-alanine-D-alanine ligase9e-23107
NC_010296:2200054:2215321221532122163791059Microcystis aeruginosa NIES-843, complete genomeD-alanyl-alanine synthetase A1e-22107
NC_013457:140474:163425163425164414990Vibrio sp. Ex25 chromosome 2, complete genomeD-alanine--D-alanine ligase2e-22106
NC_014392:1935130:1947668194766819487621095Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeD-alanine/D-alanine ligase4e-22105
NC_013947:5682895:5692767569276756938071041Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeD-alanine/D-alanine ligase5e-22105
NC_008578:2431074:2436122243612224371231002Acidothermus cellulolyticus 11B, complete genomeD-alanine--D-alanine ligase9e-22104
NC_018867:677848:6816186816186827121095Dehalobacter sp. CF chromosome, complete genomeD-alanine--D-alanine ligase3e-21102
NC_018866:611588:6171746171746182681095Dehalobacter sp. DCA chromosome, complete genomeD-alanine--D-alanine ligase3e-21102
NC_014550:1581812:1640862164086216419741113Arthrobacter arilaitensis Re117, complete genomeD-alanine--D-alanine ligase6e-21101
NC_006369:2888701:2892065289206528931591095Legionella pneumophila str. Lens, complete genomeD-alanine--D-alanine ligase A3e-2099.4
NC_016811:2903871:2908397290839729095031107Legionella pneumophila subsp. pneumophila ATCC 43290 chromosome,D-alanine--D-alanine ligase3e-2099
NC_002942:2943206:2947732294773229488381107Legionella pneumophila subsp. pneumophila str. Philadelphia 1,D-alanine-D-alanine ligase A3e-2099
NC_009921:8147947:815257481525748153539966Frankia sp. EAN1pec, complete genomeD-alanine--D-alanine ligase3e-2099
NC_014125:3054000:3058528305852830596221095Legionella pneumophila 2300/99 Alcoy chromosome, complete genomeD-alanine-D-alanine ligase4e-2098.6
NC_009494:3119997:3124523312452331256171095Legionella pneumophila str. Corby chromosome, complete genomeD-alanyl-alanine synthetase A4e-2098.6
NC_006368:3028286:3034992303499230360861095Legionella pneumophila str. Paris, complete genomeD-alanine--D-alanine ligase A4e-2098.6
NC_013946:305364:307618307618308586969Meiothermus ruber DSM 1279 chromosome, complete genomeD-alanine/D-alanine ligase8e-2097.8
NC_017043:1055569:105460710546071055572966Rickettsia montanensis str. OSU 85-930 chromosome, complete genomeD-alanine--D-alanine ligase2e-1996.7
NC_012667:839318:8499428499428509461005Vibrio cholerae MJ-1236 chromosome 2, complete genomeD-alanyl-alanine synthetase A2e-1996.3
NC_012583:683887:694133694133695122990Vibrio cholerae O395 chromosome chromosome II, complete sequenceD-alanine--D-alanine ligase3e-1995.9
NC_009456:557962:568820568820569809990Vibrio cholerae O395 chromosome 1, complete sequenceD-alanyl-alanine synthetase A3e-1995.9
NC_005140:883857:887502887502888497996Vibrio vulnificus YJ016 chromosome II, complete sequenceD-alanylalanine synthetase6e-1995.1
NC_013861:3215640:3224832322483232259261095Legionella longbeachae NSW150, complete genomeD-alanine--D-alanine ligase A9e-1994.4
NC_011884:1029328:1035538103553810365871050Cyanothece sp. PCC 7425, complete genomeD-alanine/D-alanine ligase1e-1894
NC_004668:2198027:2212967221296722139951029Enterococcus faecalis V583, complete genomeD-alanine--D-lactate ligase2e-1892.8
NC_014932:1084422:110012111001211101041921Bartonella clarridgeiae 73, complete genomeD-alanine--D-alanine ligase6e-1891.7
NC_012846:1551000:156113015611301562050921Bartonella grahamii as4aup, complete genomeD-alanine--D-alanine ligase9e-1890.9
NC_005956:1221352:123610612361061237026921Bartonella henselae str. Houston-1, complete genomeD-alanylalanine synthetase7e-1788.2
NC_012691:241404:262466262466263458993Tolumonas auensis DSM 9187, complete genomeD-alanine/D-alanine ligase9e-1787.8
NC_018720:2138180:2143934214393421451361203Bifidobacterium asteroides PRL2011 chromosome, complete genomeD-alanine--D-alanine ligase1e-1687.4
NC_019673:6362458:6388404638840463894621059Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-1687
NC_014363:1344768:1366663136666313677421080Olsenella uli DSM 7084 chromosome, complete genomeD-alanine/D-alanine ligase8e-1684.7
NC_020301:1132927:114300811430081143928921Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genomeD-alanine-D-alanine ligase3e-1582.4
NC_002947:4931476:4937693493769349387511059Pseudomonas putida KT2440, complete genomeD-alanine--D-alanine ligase A6e-1581.6
NC_009512:1691930:1705353170535317064111059Pseudomonas putida F1, complete genomeD-alanine--D-alanine ligase7e-1581.3
NC_016628:193000:2166072166072176111005Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceD-alanine--D-alanine ligase1e-1480.9
NC_010501:4080937:4087593408759340886871095Pseudomonas putida W619, complete genomeD-alanine--D-alanine ligase3e-1479.7
NC_017986:4374979:438866343886634389460798Pseudomonas putida ND6 chromosome, complete genomeD-alanine--D-alanine ligase4e-1479
NC_005955:1029435:103958310395831040503921Bartonella quintana str. Toulouse, complete genomeD-alanylalanine synthetase4e-1479
NC_019977:2141677:2145985214598521479521968Methanomethylovorans hollandica DSM 15978, complete genomeATP-grasp enzyme, D-alanine-D-alanine ligase5e-1478.6
NC_015675:6493444:6521653652165365226751023Mesorhizobium opportunistum WSM2075 chromosome, complete genomeD-alanine--D-alanine ligase1e-1274.3
NC_007164:1090858:109949110994911100099609Corynebacterium jeikeium K411, complete genomeputative D-alanine-D-alanine ligase (fragment)4e-1169.3
NC_020304:129321:129321129321130307987Desulfocapsa sulfexigens DSM 10523, complete genomeATP-grasp enzyme, D-alanine-D-alanine ligase4e-1168.9
NC_013892:114884:1148841148841159811098Xenorhabdus bovienii SS-2004 chromosome, complete genomeD-alanine--D-alanine ligase3e-0859.3
NC_015957:5136500:5147067514706751483591293Streptomyces violaceusniger Tu 4113 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein ATP-grasp3e-0859.3
NC_013730:1342500:1357954135795413596091656Spirosoma linguale DSM 74, complete genomeD-alanine--D-alanine ligase domain protein5e-0858.9
NC_014394:1554373:156283515628351563830996Gallionella capsiferriformans ES-2 chromosome, complete genomeD-alanine--D-alanine ligase domain-containing protein2e-0756.6
NC_014209:81643:117590117590118567978Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,D-alanine--D-alanine ligase1e-0654.3