Some Help

Query: NC_009494:3119997 Legionella pneumophila str. Corby chromosome, complete genome

Start: 3119997, End: 3144403, Length: 24407

Host Lineage: Legionella pneumophila; Legionella; Legionellaceae; Legionellales; Proteobacteria; Bacteria

General Information: Legionella pneumophila str. Corby is a human isolate. Causes Legionnaire's disease. This organism is a non-marine bacterium usually found growing inside other organisms such as protozoans in aquatic environments. They can also be found in soil, freshwater, and in biofilms. The first outbreak of Legionnaire's disease occurred in 1976 at an American Legion convention and the resulting pneumonia-like disease resulted in 34 deaths. The cause of the disease was traced to Legionella bacteria. Once the bacteria are brought into the lungs they make contact with alveolar macrophages and are internalized where they can cause severe respiratory distress. Internalization occurs through specialized vacuoles (replicative phagosomes) that allow the bacteria to grow and replicate prior to escape from the macrophage. Formation of the replicative phagosome, which requires reprogramming of the normal phagosome maturation pathway, requires a type IV secretion system called the Dot/Icm system. This type IV system is closely related to the conjugative system of plasmid ColIb-P9, and is involved in the secretion of numerous protein components that aid in formation of the replicative phagosome. Other virulence determinants include a set of multidrug transporters and other efflux pumps for toxic compounds that may allow the organism to persist in its habitat, a set of LPS phase variable genes that enhance immune evasion, and a type II secretion system for transport of hydrolases.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006368:30282863028286305492626641Legionella pneumophila str. Paris, complete genome046410BLASTN svgBLASTP svg
NC_002942:29432062943206296445521250Legionella pneumophila subsp. pneumophila str. Philadelphia 1,039530BLASTN svgBLASTP svg
NC_006369:28887012888701290683418134Legionella pneumophila str. Lens, complete genome031430BLASTN svgBLASTP svg
NC_013861:32156403215640323817522536Legionella longbeachae NSW150, complete genome8e-121442BLASTN svgBLASTP svg
NC_004061:146862*14686216626919408Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome8e-19103BLASTN svgBLASTP svg
NC_002528:148274*14827417635828085Buchnera aphidicola str. APS (Acyrthosiphon pisum), complete3e-18101BLASTN svgBLASTP svg
NC_019815:782987*78298780605323067Candidatus Kinetoplastibacterium crithidii (ex Angomonas deanei5e-1797.6BLASTN svgBLASTP svg
NC_010531:70804970804973271224664Polynucleobacter necessarius STIR1, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_004545:141478*14147816560324126Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome3e-1591.7BLASTN svgBLASTP svg
NC_020299:149118*14911816889819781Candidatus Kinetoplastibacterium oncopeltii TCC290E, complete2e-1385.7BLASTN svgBLASTP svg
NC_007947:79745679745682317625721Methylobacillus flagellatus KT, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_005061:96536*9653614201245477Candidatus Blochmannia floridanus, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_011751:12000*120003835526356Escherichia coli UMN026 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_011750:12047*120474221230166Escherichia coli IAI39 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_009465:813816*81381684287229057Candidatus Vesicomyosocius okutanii HA, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_010501:3987615*3987615401756729953Pseudomonas putida W619, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_018697:361339*36133938386822530Cycloclasticus sp. P1 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_011748:11394*113943596224569Escherichia coli 55989, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009800:12162*121623729725136Escherichia coli HS, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007384:16500*165004120424705Shigella sonnei Ss046, complete genome1e-0869.9BLASTN svgBLASTP svg
CU928160:11381*113813595024570Escherichia coli IAI1 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
CU928145:11394*113943596224569Escherichia coli 55989 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
CP002185:11921*119213722925309Escherichia coli W, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015276:27690002769000279436025361Marinomonas mediterranea MMB-1 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_014909:86000*8600012150135502Candidatus Blochmannia vafer str. BVAF chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014315:22669322669324800321311Nitrosococcus watsoni C-113 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013799:1117750*1117750114011522366Hydrogenobacter thermophilus TK-6, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010673:29167929167931681725139Borrelia hermsii DAH, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_002528:404545*40454542822723683Buchnera aphidicola str. APS (Acyrthosiphon pisum), complete7e-0763.9BLASTN svgBLASTP svg
NC_009654:29402782940278295966519388Marinomonas sp. MWYL1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007484:32319373231937325059618660Nitrosococcus oceani ATCC 19707, complete genome3e-0661.9BLASTN svgBLASTP svg