Pre_GI: BLASTN Hits

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Query: NC_009480:739395 Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete

Start: 739395, End: 760500, Length: 21106

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Phytopathogen that causes bacterial wilt and canker of tomato (Lycopersicon esculentum). This is considered to be the most important bacterial disease of tomato causing substantial economic losses worldwide. Bacteria enter the plant by wounds on root or stem and then find their way into the xylem allowing a massive systemic colonization. The first stage of the disease is characterized by unilateral wilting of leaves. Wilting then spreads to all leaves, canker lesions develop on the stem and the plant dies. If infection occurs at a late stage of plant development, plants can survive and yield fruit that may have spots, so called bird's eyes. Often the seeds will be infected and this has been the major source for outbreaks of Clavibacter michiganensis subsp. michiganensis infections in agriculture. Members of the Clavibacter genus are known to produce antimicrobial compounds.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015671:2371632*2371632239461522984Cellvibrio gilvus ATCC 13127 chromosome, complete genome9e-71276BLASTN svgBLASTP svg
NC_008699:1247423*1247423126898521563Nocardioides sp. JS614, complete genome3e-52214BLASTN svgBLASTP svg
NC_013093:832971*83297185669123721Actinosynnema mirum DSM 43827, complete genome4e-45190BLASTN svgBLASTP svg
NC_007777:45973794597379462670829330Frankia sp. CcI3, complete genome1e-35159BLASTN svgBLASTP svg
NC_002488:16389461638946170065561710Xylella fastidiosa 9a5c, complete genome3e-33151BLASTN svgBLASTP svg
NC_013510:12954391295439131735721919Thermomonospora curvata DSM 43183, complete genome5e-32147BLASTN svgBLASTP svg
NC_014039:70842770842772779219366Propionibacterium acnes SK137 chromosome, complete genome5e-23117BLASTN svgBLASTP svg
NC_006087:676318*67631869499818681Leifsonia xyli subsp. xyli str. CTCB07, complete genome2e-22115BLASTN svgBLASTP svg
NC_015948:1636491*1636491166153625046Haloarcula hispanica ATCC 33960 chromosome chromosome I, complete2e-19105BLASTN svgBLASTP svg
NC_003296:14199921419992144318623195Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, complete7e-19103BLASTN svgBLASTP svg
NC_006177:12546351254635128152926895Symbiobacterium thermophilum IAM 14863, complete genome7e-19103BLASTN svgBLASTP svg
NC_010002:2518599*2518599254275024152Delftia acidovorans SPH-1, complete genome3e-18101BLASTN svgBLASTP svg
NC_015563:4911188*4911188493357422387Delftia sp. Cs1-4 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010725:3917369*3917369396168844320Methylobacterium populi BJ001, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_015125:788931*78893181459925669Microbacterium testaceum StLB037, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_015663:1356982*1356982138951032529Enterobacter aerogenes KCTC 2190 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009921:54006635400663541981119149Frankia sp. EAN1pec, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_011894:62596496259649628391924271Methylobacterium nodulans ORS 2060, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_013729:1556922*1556922158209925178Kribbella flavida DSM 17836, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_018720:15100841510084153502824945Bifidobacterium asteroides PRL2011 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_013169:23514752351475238021528741Kytococcus sedentarius DSM 20547, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_012590:2501593*2501593252409922507Corynebacterium aurimucosum ATCC 700975, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009138:15839881583988160724223255Herminiimonas arsenicoxydans, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015673:106038*10603812809922062Corynebacterium resistens DSM 45100 chromosome, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_007958:396439*39643942143724999Rhodopseudomonas palustris BisB5, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007164:453743*45374347209918357Corynebacterium jeikeium K411, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009051:41992941992943959919671Methanoculleus marisnigri JR1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014973:1767798*1767798179025122454Geobacter sp. M18 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007952:14160001416000143886822869Burkholderia xenovorans LB400 chromosome 2, complete sequence4e-0867.9BLASTN svgBLASTP svg
NC_007511:35121003512100353789225793Burkholderia sp. 383 chromosome 2, complete sequence4e-0867.9BLASTN svgBLASTP svg
NC_015953:25121522512152253676224611Streptomyces sp. SirexAA-E chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014215:22592902259290228320523916Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,2e-0765.9BLASTN svgBLASTP svg
NC_010086:1907959*1907959194027532317Burkholderia multivorans ATCC 17616 chromosome 2, complete6e-0763.9BLASTN svgBLASTP svg
NC_010805:530876*53087656144030565Burkholderia multivorans ATCC 17616 chromosome 2, complete6e-0763.9BLASTN svgBLASTP svg
NC_010804:2206000*2206000222893422935Burkholderia multivorans ATCC 17616 chromosome 1, complete1e-0560BLASTN svgBLASTP svg
NC_007651:2166000*2166000218478418785Burkholderia thailandensis E264 chromosome I, complete sequence1e-0560BLASTN svgBLASTP svg