Pre_GI: BLASTN Hits

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Query: NC_009479:34001 Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmid

Start: 34001, End: 56213, Length: 22213

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Phytopathogen that causes bacterial wilt and canker of tomato (Lycopersicon esculentum). This is considered to be the most important bacterial disease of tomato causing substantial economic losses worldwide. Bacteria enter the plant by wounds on root or stem and then find their way into the xylem allowing a massive systemic colonization. The first stage of the disease is characterized by unilateral wilting of leaves. Wilting then spreads to all leaves, canker lesions develop on the stem and the plant dies. If infection occurs at a late stage of plant development, plants can survive and yield fruit that may have spots, so called bird's eyes. Often the seeds will be infected and this has been the major source for outbreaks of Clavibacter michiganensis subsp. michiganensis infections in agriculture. Members of the Clavibacter genus are known to produce antimicrobial compounds.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009480:996409964013380134162Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete2e-38168BLASTN svgBLASTP svg
NC_009480:31412314127854247131Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete02510BLASTN svgBLASTP svg
NC_010407:32960*329605163318674Clavibacter michiganensis subsp. sepedonicus chromosome, complete02305BLASTN svgBLASTP svg
NC_010407:31326833132683315489022208Clavibacter michiganensis subsp. sepedonicus chromosome, complete1e-66262BLASTN svgBLASTP svg
NC_010399:13222132223559922378Clavibacter michiganensis subsp. sepedonicus plasmid pCS1, complete8e-99369BLASTN svgBLASTP svg
NC_010408:798557985510599926145Clavibacter michiganensis subsp. sepedonicus plasmid pCSL1,01025BLASTN svgBLASTP svg