Pre_GI: BLASTN Hits

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Query: NC_009456:557962 Vibrio cholerae O395 chromosome 1, complete sequence

Start: 557962, End: 576686, Length: 18725

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Aquatic organism that causes Cholera. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_002505:15501081550108158212332016Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete08286BLASTN svgBLASTP svg
NC_013457:14047414047416441423941Vibrio sp. Ex25 chromosome 2, complete genome9e-0660BLASTN svgBLASTP svg
NC_005140:88385788385790391320057Vibrio vulnificus YJ016 chromosome II, complete sequence6e-19103BLASTN svgBLASTP svg