Pre_GI: BLASTP Hits

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Query: NC_009456:557962:558913 Vibrio cholerae O395 chromosome 1, complete sequence

Start: 558913, End: 560079, Length: 1167

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Aquatic organism that causes Cholera. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012667:839318:8596558596558608211167Vibrio cholerae MJ-1236 chromosome 2, complete genomeTraF-related protein0785
NC_012583:683887:7038637038637050291167Vibrio cholerae O395 chromosome chromosome II, complete sequencehypothetical protein0785
NC_016628:193000:1993481993482005201173Vibrio furnissii NCTC 11218 chromosome 2, complete sequencehypothetical protein2e-153542
NC_005140:883857:8997958997959009041110Vibrio vulnificus YJ016 chromosome II, complete sequencehypothetical protein1e-121436
NC_013457:140474:1466111466111477321122Vibrio sp. Ex25 chromosome 2, complete genomeTraF-related protein4e-121434
NC_014966:919442:9301189301189311461029Vibrio vulnificus MO6-24/O chromosome II, complete sequencetraF-related protein7e-117420
NC_016945:666000:6841916841916853511161Vibrio cholerae IEC224 chromosome II, complete sequencehypothetical protein5e-54211
NC_013421:701005:7394377394377406361200Pectobacterium wasabiae WPP163, complete genomeputative plasmid transfer protein2e-40167
NC_004547:611178:6190346190346202361203Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative plasmid transfer protein2e-39163
NC_014121:489500:5192025192025203981197Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein9e-38157
NC_011745:3443371:3446437344643734476871251Escherichia coli ED1a chromosome, complete genomeputative plasmid transfer protein4e-37155
NC_016816:4129299:4132852413285241340601209Pantoea ananatis LMG 5342, complete genometype IV pilus protein, TraF3e-34146
NC_013592:956829:9599709599709612171248Dickeya dadantii Ech586, complete genomeputative plasmid transfer protein2e-33144
NC_013971:335247:3380583380583392901233Erwinia amylovora ATCC 49946 chromosome, complete genomeplasmid transfer protein3e-33143
NC_013961:3413011:3432092343209234333241233Erwinia amylovora, complete genomehypothetical protein3e-33143
NC_010102:4557037:4574291457429145753941104Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-33142
CU928145:4792703:480058548005854801385801Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein, putative plasmid transfer protein (partial)3e-2099.8
NC_011748:4792703:480058548005854801385801Escherichia coli 55989, complete genome3e-2099.8
NC_017328:3088907:309906630990663099866801Shigella flexneri 2002017 chromosome, complete genomehypothetical protein5e-2099.4
NC_004741:3041294:305149230514923052253762Shigella flexneri 2a str. 2457T, complete genomehypothetical protein1e-1997.4
NC_004337:3049118:305931630593163060077762Shigella flexneri 2a str. 301, complete genomehypothetical protein1e-1997.4
NC_016822:3420826:342900434290043429765762Shigella sonnei 53G, complete genomeputative plasmid transfer protein3e-1996.3
NC_007384:3383983:339417933941793394844666Shigella sonnei Ss046, complete genomehypothetical protein7e-1995.1