Pre_GI: BLASTP Hits

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Query: NC_009439:918534:922213 Pseudomonas mendocina ymp, complete genome

Start: 922213, End: 922854, Length: 642

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015675:1721543:174372417437241744335612Mesorhizobium opportunistum WSM2075 chromosome, complete genomeSaccharopine dehydrogenase2e-39161
NC_002678:2739829:274306327430632743674612Mesorhizobium loti MAFF303099, complete genomehypothetical protein4e-38157
NC_019973:1731626:175381517538151754426612Mesorhizobium australicum WSM2073, complete genomeputative NADH-flavin reductase2e-37155
NC_017033:1525132:154465115446511545262612Frateuria aurantia DSM 6220 chromosome, complete genomeputative NADH-flavin reductase3e-33141
NC_010516:359310:363302363302363940639Clostridium botulinum B1 str. Okra, complete genomehypothetical protein8e-29126
NC_019673:3726519:373858037385803739227648Saccharothrix espanaensis DSM 44229 complete genomeNAD-dependent epimerase/dehydratase1e-26119
NC_015634:2779392:277939227793922780033642Bacillus coagulans 2-6 chromosome, complete genomeNAD(P)-binding Rossmann-fold domain-containing protein9e-23106
NC_009725:496443:512691512691513329639Bacillus amyloliquefaciens FZB42, complete genomeYwnB3e-21101
NC_020410:495184:511514511514512152639Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeNAD(P)-binding domain / putative oxidoreductase6e-21100
NC_019842:484933:508122508122508760639Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,hypothetical protein1e-2099.4
NC_016582:1639375:165877516587751659419645Streptomyces bingchenggensis BCW-1 chromosome, complete genomeTrkA domain-containing protein5e-1890.9
NC_017904:1831071:183257918325791833238660Mycobacterium sp. MOTT36Y chromosome, complete genomeNmrA family protein2e-1685.9
NC_006582:3949832:394983239498323950476645Bacillus clausii KSM-K16, complete genomeNADH-dependent flavin oxidoreductase6e-1580.9
NC_013743:1450417:145041714504171451055639Haloterrigena turkmenica DSM 5511, complete genomeNAD-dependent epimerase/dehydratase2e-1479
NC_018720:627642:634018634018634647630Bifidobacterium asteroides PRL2011 chromosome, complete genomeputative NADH-flavin reductase8e-1477
NC_012925:191501:193269193269193895627Streptococcus suis P1/7, complete genomehypothetical protein1e-1376.3
NC_008526:1822000:182337718233771824015639Lactobacillus casei ATCC 334, complete genomePutative NADH-flavin reductase2e-1272.4
NC_014334:1775781:177993117799311780569639Lactobacillus casei str. Zhang chromosome, complete genomeputative NADH-flavin reductase2e-1272.4
NC_010999:1979989:198413919841391984777639Lactobacillus casei, complete genomeNAD-dependent epimerase/dehydratase2e-1272.4
NC_007333:1411050:143347614334761434111636Thermobifida fusca YX, complete genomehypothetical protein3e-1271.6
NC_002163:1471517:148896114889611489596636Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomehypothetical protein3e-1168.6
NC_008787:1463696:146369614636961464331636Campylobacter jejuni subsp. jejuni 81-176, complete genomeconserved hypothetical protein, degenerate4e-1168.2
NC_018012:1628364:163386016338601634471612Thiocystis violascens DSM 198 chromosome, complete genomeputative NADH-flavin reductase3e-0962
NC_018750:4688968:469004446900444690676633Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein1e-0859.7
NC_013199:1886271:188997718899771890615639Lactobacillus rhamnosus Lc 705, complete genomeNADH-flavin reductase / saccharopine dehydrogenase, oxidoreductase protein3e-0858.5
NC_013198:1921500:192377819237781924416639Lactobacillus rhamnosus GG, complete genomeNADH-flavin reductase / saccharopine dehydrogenase, oxidoreductase protein3e-0858.5
NC_013222:1898164:191233119123311912996666Robiginitalea biformata HTCC2501, complete genomeputative flavin reductase9e-0857
NC_012880:2871480:288301328830132883669657Dickeya dadantii Ech703, complete genomeNAD-dependent epimerase/dehydratase4e-0754.7
NC_008699:2294361:234216723421672342799633Nocardioides sp. JS614, complete genomeNmrA family protein5e-0754.7
NC_015957:7348269:739521373952137395821609Streptomyces violaceusniger Tu 4113 chromosome, complete genomehypothetical protein1e-0653.1
NC_009921:3384116:338663933866393387334696Frankia sp. EAN1pec, complete genomeNAD-dependent epimerase/dehydratase3e-0652
NC_009254:442360:455051455051455704654Burkholderia vietnamiensis G4 chromosome 3, complete sequenceNmrA family protein7e-0650.8