Pre_GI: BLASTP Hits

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Query: NC_009439:794498:814201 Pseudomonas mendocina ymp, complete genome

Start: 814201, End: 814737, Length: 537

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015224:3225000:322867932286793229227549Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein3e-22104
NC_008800:1459015:147742114774211477969549Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein9e-22102
NC_017168:2626996:264660826466082647156549Yersinia pestis A1122 chromosome, complete genomeNUDIX hydrolase YfcD3e-21101
NC_017154:3188795:320840732084073208955549Yersinia pestis D106004 chromosome, complete genomehypothetical protein3e-21101
NC_014029:3245778:326539232653923265940549Yersinia pestis Z176003 chromosome, complete genomehypothetical protein3e-21101
NC_012779:2586175:260127326012732601791519Edwardsiella ictaluri 93-146, complete genomehypothetical protein2e-1892
NC_013093:2471574:247335624733562473865510Actinosynnema mirum DSM 43827, complete genomeNUDIX hydrolase2e-1168.2
NC_014820:1618606:161797716179771618609633Cenarchaeum symbiosum A, complete genomeisopentenyl-diphosphate delta-isomerase9e-1166.6
NC_016629:3396500:340510634051063405669564Desulfovibrio africanus str. Walvis Bay chromosome, completeNUDIX hydrolase9e-1166.2
NC_008497:447427:458363458363458881519Lactobacillus brevis ATCC 367, complete genomeNUDIX family hydrolase8e-0960.1
NC_010001:1884500:188666918866691887664996Clostridium phytofermentans ISDg, complete genomeNUDIX hydrolase2e-0755.8
NC_001263:72681:801228012280637516Deinococcus radiodurans R1 chromosome 1, complete sequenceMutT/nudix family protein3e-0754.7
NC_012796:2041579:204480920448092045363555Desulfovibrio magneticus RS-1, complete genomeisopentenyl-diphosphate delta-isomerase family protein6e-0753.5
NC_015164:1877981:189039018903901890890501Bacteroides salanitronis DSM 18170 chromosome, complete genomeNUDIX hydrolase1e-0652.8
NC_018012:2159814:217075721707572171329573Thiocystis violascens DSM 198 chromosome, complete genomeisopentenyl-diphosphate delta-isomerase2e-0652
NC_015977:442493:471535471535472086552Roseburia hominis A2-183 chromosome, complete genomeNUDIX hydrolase2e-0652
NC_016832:3020000:303525530352553035800546Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Isopentenyl-diphosphate Delta-isomerase2e-0651.6
NC_003198:3042000:306112030611203061665546Salmonella enterica subsp. enterica serovar Typhi str. CT18,isopentenyl-diphosphate delta-isomerase2e-0651.6
NC_004631:3030580:304661530466153047160546Salmonella enterica subsp. enterica serovar Typhi Ty2, completeisopentenyl-diphosphate delta-isomerase2e-0651.6