Pre_GI: BLASTP Hits

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Query: NC_009439:794498:808572 Pseudomonas mendocina ymp, complete genome

Start: 808572, End: 811127, Length: 2556

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009439:794498:8030228030228083165295Pseudomonas mendocina ymp, complete genomehemolysin-type calcium-binding region0690
NC_002947:4362271:4372649437264943749552307Pseudomonas putida KT2440, complete genomecalcium-binding protein, hemolysin-type1e-54215
NC_008639:2702662:2702662270266227092586597Chlorobium phaeobacteroides DSM 266, complete genomeHemolysin-type calcium-binding region1e-53212
NC_019774:74131:84305843059487010566Anabaena cylindrica PCC 7122 plasmid pANACY.04, complete sequenceProprotein convertase P1e-48195
NC_014355:3435343:3441502344150234488307329Candidatus Nitrospira defluvii, complete genomehypothetical protein3e-48194
NC_015677:2939301:29393012939301295118911889Ramlibacter tataouinensis TTB310 chromosome, complete genomehypothetical protein1e-47192
NC_008609:2565161:2565161256516125740258865Pelobacter propionicus DSM 2379, complete genomeIg family protein3e-46187
NC_019774:74131:7679576795804783684Anabaena cylindrica PCC 7122 plasmid pANACY.04, complete sequenceIg family protein3e-43177
NC_008380:855246:8552468552468600034758Rhizobium leguminosarum bv. viciae 3841, complete genomeputative rhizobiocin3e-43177
NC_010524:674216:6782256782256824724248Leptothrix cholodnii SP-6, complete genomeNa-Ca exchanger/integrin-beta45e-40166
NC_005773:1675793:1675793167579316806254833Pseudomonas syringae pv. phaseolicola 1448A, complete genomePoly(beta-D-mannuronate) C5 epimerase 3 (Mannuronanepimerase 3)5e-39163
NC_014366:2904500:2908284290828429174159132Gamma proteobacterium HdN1, complete genomeHemolysin-type calcium-binding protein4e-38160
NC_015733:1398083:1407969140796914102092241Pseudomonas putida S16 chromosome, complete genomecalcium-binding protein, hemolysin-type6e-38159
NC_009085:1232890:1241147124114712507979651Acinetobacter baumannii ATCC 17978, complete genomeHemolysin-type calcium-binding region8e-34146
NC_013194:3724500:3724734372473437289004167Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completepeptidase S8 and S53 subtilisin kexin sedolisin7e-32139
NC_010172:2722000:2732015273201527335261512Methylobacterium extorquens PA1, complete genomeHemolysin-type calcium-binding region8e-25116
NC_012988:4262631:4269339426933942705801242Methylobacterium extorquens DM4, complete genomehypothetical protein3e-24114
NC_010172:3894652:3901322390132239027101389Methylobacterium extorquens PA1, complete genomeHemolysin-type calcium-binding region3e-24114
NC_010803:2067539:20675392067539208054313005Chlorobium limicola DSM 245, complete genomeHemolysin-type calcium-binding region9e-22106
NC_015856:2146713:2161715216171521701028388Collimonas fungivorans Ter331 chromosome, complete genomecalcium binding hemolysin protein1e-21105
NC_010552:2331486:2339047233904723436514605Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceHemolysin-type calcium-binding region1e-20102
NC_007949:9839:2514025140314336294Polaromonas sp. JS666 plasmid 1, complete sequenceHemolysin-type calcium-binding region6e-20100
NC_010997:910938:9368919368919379401050Rhizobium etli CIAT 652 plasmid pC, complete sequencehypothetical protein4e-20100
NC_010515:2037825:2048160204816020527584599Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceHemolysin-type calcium-binding region8e-2099.8
NC_020829:2022000:20358262035826204585710032Pseudomonas denitrificans ATCC 13867, complete genomeHlyJ hemolysin-like protein7e-1893.2
NC_017249:7341428:7341428734142873504339006Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein7e-1686.7
NC_013851:3300278:3304785330478533084683684Allochromatium vinosum DSM 180 chromosome, complete genomeHemolysin-type calcium-binding region2e-1482
NC_009482:822716:8331158331158388625748Synechococcus sp. RCC307 chromosome, complete genomehypothetical protein6e-1480.1
NC_018000:3009864:3032259303225930338451587Sinorhizobium fredii USDA 257 chromosome, complete genomeprotease1e-1379.3
NC_007493:1929000:1948474194847419500691596Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceNeutral zinc metallopeptidase7e-1273.2
NC_012811:317308:3261433261433274891347Methylobacterium extorquens AM1 megaplasmid, complete sequencehypothetical protein1e-1172.4
NC_017323:689512:6908646908646924681605Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequencehemolysin-type calcium-binding protein5e-1170.5
NC_009620:1504933:1515366151536615170901725Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequenceHemolysin-type calcium-binding protein9e-1169.7
NC_010296:1081728:1085659108565910932637605Microcystis aeruginosa NIES-843, complete genomeputative peptidase1e-1069.3
NC_008570:3013263:30132633013263302604512783Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomestructural toxin protein RtxA2e-1068.9
NC_012587:1203103:1206515120651512077741260Rhizobium sp. NGR234, complete genomehypothetical protein2e-1068.6
NC_015730:3662934:3662934366293436659302997Roseobacter litoralis Och 149 chromosome, complete genomehypothetical protein3e-1068.2
NC_012912:2426520:2431041243104124324861446Dickeya zeae Ech1591, complete genomeSerralysin9e-1066.2
NC_020209:5077410:51003835100383511615915777Pseudomonas poae RE*1-1-14, complete genomeouter membrane adhesin-like protein2e-0965.5
NC_011753:1501868:1519948151994815255995652Vibrio splendidus LGP32 chromosome 1, complete genomeputative hemolysin-type calcium-binding region2e-0965.1
NC_009482:619467:6313516313516323881038Synechococcus sp. RCC307 chromosome, complete genomehypothetical protein3e-0964.7
NC_011894:2618951:26189512618951263131312363Methylobacterium nodulans ORS 2060, complete genomehypothetical protein3e-0964.7
NC_014500:2402881:2428663242866324300961434Dickeya dadantii 3937 chromosome, complete genomesecreted protease A7e-0963.5
NC_005773:951744:96199296199297731515324Pseudomonas syringae pv. phaseolicola 1448A, complete genomecalcium binding hemolysin protein, putative6e-0963.5
NC_008312:7287000:72904027290402730068510284Trichodesmium erythraeum IMS101, complete genomeNa-Ca exchanger/integrin-beta47e-0963.2
NC_014393:3494863:3500045350004535092969252Clostridium cellulovorans 743B chromosome, complete genomecalcium binding hemolysin protein, putative1e-0862.4
NC_007005:98488:1337791337791353261548Pseudomonas syringae pv. syringae B728a, complete genomeHemolysin-type calcium-binding region3e-0861.6
NC_014762:1204584:12045841204584121461510032Sulfuricurvum kujiense DSM 16994 chromosome, complete genomeouter membrane adhesin like proteiin3e-0861.6
NC_013592:2338403:2338403233840323398451443Dickeya dadantii Ech586, complete genomeSerralysin3e-0861.2
NC_013592:2338403:2339996233999623414381443Dickeya dadantii Ech586, complete genomeSerralysin4e-0860.8
NC_010997:910938:9418119418119455723762Rhizobium etli CIAT 652 plasmid pC, complete sequenceputative hemolysin-type calcium-binding protein7e-0860.1
NC_009050:212270:2122702122702203068037Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceputative outer membrane adhesin like proteiin1e-0759.7
NC_009482:822716:8305498305498325492001Synechococcus sp. RCC307 chromosome, complete genomehypothetical protein1e-0759.7
NC_005773:5734733:5735988573598857375351548Pseudomonas syringae pv. phaseolicola 1448A, complete genomePoly(beta-D-mannuronate) C5 epimerase 3 (Mannuronanepimerase 3)1e-0759.3
NC_012912:2426520:2429447242944724308891443Dickeya zeae Ech1591, complete genomeSerralysin1e-0758.9
NC_007645:2628423:26414702641470265192110452Hahella chejuensis KCTC 2396, complete genomeRTX toxins and related Ca2+-binding protein2e-0758.9
NC_020908:823589:8219448219448236621719Octadecabacter arcticus 238, complete genomehypothetical protein2e-0758.5
NC_008209:3313087:3329975332997533310031029Roseobacter denitrificans OCh 114, complete genomecalcium binding hemolysin protein, putative2e-0758.5
NC_020064:2299950:2309182230918223105821401Serratia marcescens FGI94, complete genomehemolysin-type calcium-binding protein3e-0758.2
NC_003911:3864852:3876050387605038825446495Silicibacter pomeroyi DSS-3, complete genometype I secretion target repeat protein8e-0756.6
NC_008820:2268900:2275451227545122787863336Prochlorococcus marinus str. MIT 9303, complete genomehypothetical protein8e-0756.6
NC_010296:1081728:1094367109436710994455079Microcystis aeruginosa NIES-843, complete genomehypothetical protein9e-0756.6
NC_014393:2905248:2911063291106329175066444Clostridium cellulovorans 743B chromosome, complete genomeHemolysin-type calcium-binding region1e-0656.2
NC_004463:8401060:8420476842047684218731398Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein1e-0656.2
NC_008820:2268900:2279612227961222829773366Prochlorococcus marinus str. MIT 9303, complete genomehypothetical protein1e-0656.2
NC_003295:271736:2717362717362752063471Ralstonia solanacearum GMI1000, complete genomePUTATIVE CALCIUM BINDING HEMOLYSIN PROTEIN1e-0655.8
NC_009956:88354:8835488354940415688Dinoroseobacter shibae DFL 12 plasmid pDSHI02, complete sequencehemolysin-type calcium-binding region1e-0655.8
NC_009494:775676:78114678114680001518870Legionella pneumophila str. Corby chromosome, complete genomehypothetical protein1e-0655.8
NC_003295:271736:2771672771672816664500Ralstonia solanacearum GMI1000, complete genomePUTATIVE CALCIUM BINDING HEMOLYSIN PROTEIN2e-0655.5
NC_014125:766576:77204577204578605414010Legionella pneumophila 2300/99 Alcoy chromosome, complete genomehypothetical protein2e-0655.5
NC_014307:3179100:3187989318798931947896801Ralstonia solanacearum CFBP2957 chromosome, complete genomecalcium binding hemolysin protein (modular protein)2e-0655.1
NC_009952:1680682:1686892168689216884061515Dinoroseobacter shibae DFL 12, complete genomeputative hemolysin precursor2e-0655.1
NC_009832:2596344:2607072260707226085441473Serratia proteamaculans 568, complete genomeSerralysin3e-0654.7
NC_021150:1322000:1341839134183913430921254Azotobacter vinelandii CA6, complete genomeAlginate lyase4e-0654.3
NC_012560:1322000:1341827134182713430801254Azotobacter vinelandii DJ, complete genomeAlginate lyase4e-0654.3
NC_007494:621673:6224986224986241681671Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequenceHemolysin-type calcium-binding region, RTX4e-0654.3
NC_013592:2338403:2341853234185323432891437Dickeya dadantii Ech586, complete genomeSerralysin4e-0654.3
NC_011894:7421867:7428650742865074304971848Methylobacterium nodulans ORS 2060, complete genomeHemolysin-type calcium-binding region3e-0654.3
NC_011958:1121387:113831511383151138551237Rhodobacter sphaeroides KD131 chromosome 2, complete genomeCalcium-binding protein, hemolysin-type3e-0654.3
NC_014393:2771774:2784278278427827871662889Clostridium cellulovorans 743B chromosome, complete genomeHemolysin-type calcium-binding region5e-0653.9
NC_009943:677324:69089669089672912138226Candidatus Desulfococcus oleovorans Hxd3, complete genomeHemolysin-type calcium-binding region6e-0653.9
NC_015424:2695847:2699680269968027043414662Aeromonas veronii B565 chromosome, complete genomeRTX toxin-like protein6e-0653.9
NC_014006:3124818:31543073154307316678612480Sphingobium japonicum UT26S chromosome 1, complete genomeputative Ca2+-binding hemolysin7e-0653.5
NC_014393:2771774:2792391279239127956903300Clostridium cellulovorans 743B chromosome, complete genomeHemolysin-type calcium-binding region9e-0653.1