Pre_GI: BLASTP Hits

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Query: NC_009439:794498:803022 Pseudomonas mendocina ymp, complete genome

Start: 803022, End: 808316, Length: 5295

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009439:794498:8085728085728111272556Pseudomonas mendocina ymp, complete genomehemolysin-type calcium-binding region0654
NC_010524:674216:6782256782256824724248Leptothrix cholodnii SP-6, complete genomeNa-Ca exchanger/integrin-beta47e-81303
NC_008380:855246:8552468552468600034758Rhizobium leguminosarum bv. viciae 3841, complete genomeputative rhizobiocin3e-80301
NC_015677:2939301:29393012939301295118911889Ramlibacter tataouinensis TTB310 chromosome, complete genomehypothetical protein6e-78293
NC_019774:74131:84305843059487010566Anabaena cylindrica PCC 7122 plasmid pANACY.04, complete sequenceProprotein convertase P5e-73277
NC_013194:3724500:3724734372473437289004167Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completepeptidase S8 and S53 subtilisin kexin sedolisin7e-66253
NC_014355:3435343:3441502344150234488307329Candidatus Nitrospira defluvii, complete genomehypothetical protein1e-65253
NC_008609:2565161:2565161256516125740258865Pelobacter propionicus DSM 2379, complete genomeIg family protein1e-62243
NC_008639:2702662:2702662270266227092586597Chlorobium phaeobacteroides DSM 266, complete genomeHemolysin-type calcium-binding region2e-62242
NC_014366:2904500:2908284290828429174159132Gamma proteobacterium HdN1, complete genomeHemolysin-type calcium-binding protein2e-58229
NC_019774:74131:7679576795804783684Anabaena cylindrica PCC 7122 plasmid pANACY.04, complete sequenceIg family protein2e-51205
NC_010803:2067539:20675392067539208054313005Chlorobium limicola DSM 245, complete genomeHemolysin-type calcium-binding region3e-44181
NC_009085:1232890:1241147124114712507979651Acinetobacter baumannii ATCC 17978, complete genomeHemolysin-type calcium-binding region7e-44180
NC_002947:4362271:4372649437264943749552307Pseudomonas putida KT2440, complete genomecalcium-binding protein, hemolysin-type3e-43178
NC_015733:1398083:1407969140796914102092241Pseudomonas putida S16 chromosome, complete genomecalcium-binding protein, hemolysin-type7e-39164
NC_014166:1478469:14865271486527150744220916Arcobacter nitrofigilis DSM 7299 chromosome, complete genometype 1 secretion target domain-containing protein3e-38162
NC_005773:1675793:1675793167579316806254833Pseudomonas syringae pv. phaseolicola 1448A, complete genomePoly(beta-D-mannuronate) C5 epimerase 3 (Mannuronanepimerase 3)2e-36155
NC_010515:2037825:2048160204816020527584599Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceHemolysin-type calcium-binding region2e-34149
NC_012988:4262631:4269339426933942705801242Methylobacterium extorquens DM4, complete genomehypothetical protein2e-34149
NC_010172:3894652:3901322390132239027101389Methylobacterium extorquens PA1, complete genomeHemolysin-type calcium-binding region3e-34148
NC_010552:2331486:2339047233904723436514605Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceHemolysin-type calcium-binding region1e-33146
NC_015856:2146713:2161715216171521701028388Collimonas fungivorans Ter331 chromosome, complete genomecalcium binding hemolysin protein5e-33144
NC_007949:9839:2514025140314336294Polaromonas sp. JS666 plasmid 1, complete sequenceHemolysin-type calcium-binding region1e-30136
NC_010172:2722000:2732015273201527335261512Methylobacterium extorquens PA1, complete genomeHemolysin-type calcium-binding region9e-28127
NC_010997:910938:9368919368919379401050Rhizobium etli CIAT 652 plasmid pC, complete sequencehypothetical protein1e-24116
NC_017249:7341428:7341428734142873504339006Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-24115
NC_020829:2022000:20358262035826204585710032Pseudomonas denitrificans ATCC 13867, complete genomeHlyJ hemolysin-like protein1e-23113
NC_012587:1203103:1206515120651512077741260Rhizobium sp. NGR234, complete genomehypothetical protein9e-20100
NC_013851:3300278:3304785330478533084683684Allochromatium vinosum DSM 180 chromosome, complete genomeHemolysin-type calcium-binding region3e-1895.9
NC_006138:2397652:2406773240677324146657893Desulfotalea psychrophila LSv54, complete genomehypothetical protein3e-1792.4
NC_007493:1929000:1948474194847419500691596Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceNeutral zinc metallopeptidase8e-1687.4
NC_012811:317308:3261433261433274891347Methylobacterium extorquens AM1 megaplasmid, complete sequencehypothetical protein1e-1587
NC_009482:822716:8331158331158388625748Synechococcus sp. RCC307 chromosome, complete genomehypothetical protein9e-1584.3
NC_017323:689512:6908646908646924681605Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequencehemolysin-type calcium-binding protein3e-1482
NC_008767:549351:5547205547205608096090Neisseria meningitidis FAM18, complete genomeiron-regulated protein FrpC6e-1481.3
NC_009620:1504933:1515366151536615170901725Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequenceHemolysin-type calcium-binding protein7e-1481.3
NC_014006:3124818:31543073154307316678612480Sphingobium japonicum UT26S chromosome 1, complete genomeputative Ca2+-binding hemolysin3e-1379
NC_003112:1423528:1443626144362614491155490Neisseria meningitidis MC58, complete genomeiron-regulated protein FrpC4e-1378.6
NC_003911:3864852:3876050387605038825446495Silicibacter pomeroyi DSS-3, complete genometype I secretion target repeat protein4e-1378.6
NC_017513:548882:5599725599725636043633Neisseria meningitidis G2136 chromosome, complete genomeIron-regulated protein frpC1e-1277
NC_015730:3662934:3662934366293436659302997Roseobacter litoralis Och 149 chromosome, complete genomehypothetical protein2e-1173.2
NC_009050:212270:2122702122702203068037Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceputative outer membrane adhesin like proteiin3e-1172.4
NC_012796:1049034:1145920114592011480162097Desulfovibrio magneticus RS-1, complete genomeflagellin5e-1171.6
NC_018000:3009864:3032259303225930338451587Sinorhizobium fredii USDA 257 chromosome, complete genomeprotease9e-1170.9
NC_003112:603879:6141116141116180193909Neisseria meningitidis MC58, complete genomeputative iron-regulated protein FrpA2e-1069.7
NC_017516:879834:8837048837048879934290Neisseria meningitidis H44/76 chromosome, complete genomeIron-regulated protein frpC3e-1069.3
NC_011894:2618951:26189512618951263131312363Methylobacterium nodulans ORS 2060, complete genomehypothetical protein3e-1068.9
NC_013851:228953:25562925562926692311295Allochromatium vinosum DSM 180 chromosome, complete genomeouter membrane adhesin like proteiin4e-1068.9
NC_003911:2540453:2548868254886825521373270Silicibacter pomeroyi DSS-3, complete genometype I secretion target repeat protein5e-1068.2
NC_014125:766576:77204577204578605414010Legionella pneumophila 2300/99 Alcoy chromosome, complete genomehypothetical protein6e-1068.2
NC_017515:1653306:1673714167371416776223909Neisseria meningitidis M04-240196 chromosome, complete genomeiron-regulated protein FrpA7e-1067.8
NC_009494:775676:78114678114680001518870Legionella pneumophila str. Corby chromosome, complete genomehypothetical protein7e-1067.8
NC_017515:875500:8798268798268837733948Neisseria meningitidis M04-240196 chromosome, complete genomeiron-regulated protein FrpA7e-1067.8
NC_013016:1289975:1300992130099213052604269Neisseria meningitidis alpha14 chromosome, complete genomeFrpA/C-like protein1e-0967
NC_009956:88354:8835488354940415688Dinoroseobacter shibae DFL 12 plasmid pDSHI02, complete sequencehemolysin-type calcium-binding region2e-0966.6
NC_008435:1131242:1131242113124211334462205Rhodopseudomonas palustris BisA53, complete genomeRTX toxins and related Ca2+-binding proteins-like protein3e-0965.9
NC_017059:967309:9863069863069962719966Rhodospirillum photometricum DSM 122, complete genomePeptidase M10A and M12B, matrixin and adamalysin3e-0965.5
NC_014393:2771774:2792391279239127956903300Clostridium cellulovorans 743B chromosome, complete genomeHemolysin-type calcium-binding region4e-0965.5
NC_010120:1313500:1323464132346413273723909Neisseria meningitidis 053442, complete genomeiron-regulated protein FrpA, putative4e-0965.5
NC_005773:951744:96199296199297731515324Pseudomonas syringae pv. phaseolicola 1448A, complete genomecalcium binding hemolysin protein, putative5e-0965.1
NC_011894:6888562:6900938690093869025181581Methylobacterium nodulans ORS 2060, complete genomeHemolysin-type calcium-binding region4e-0965.1
NC_013016:500789:5105365105365162445709Neisseria meningitidis alpha14 chromosome, complete genomeputative RTX-family exoprotein4e-0965.1
NC_008570:3013263:30132633013263302604512783Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomestructural toxin protein RtxA4e-0965.1
NC_014393:3494863:3509510350951035158876378Clostridium cellulovorans 743B chromosome, complete genomeHemolysin-type calcium-binding region1e-0863.5
NC_011753:1501868:1519948151994815255995652Vibrio splendidus LGP32 chromosome 1, complete genomeputative hemolysin-type calcium-binding region2e-0863.2
NC_009482:822716:8278928278928299672076Synechococcus sp. RCC307 chromosome, complete genomehypothetical protein2e-0863.2
NC_010506:602000:59737259737264634048969Shewanella woodyi ATCC 51908, complete genomeouter membrane adhesin like proteiin2e-0863.2
NC_017501:980848:9847999847999878373039Neisseria meningitidis 8013, complete genomeFrpA/C protein2e-0863.2
NC_017513:1331623:1348540134854013533994860Neisseria meningitidis G2136 chromosome, complete genomeIron-regulated protein frpC2e-0863.2
NC_012912:2426520:2431041243104124324861446Dickeya zeae Ech1591, complete genomeSerralysin2e-0863.2
NC_014393:2771774:2789085278908527918292745Clostridium cellulovorans 743B chromosome, complete genomeHemolysin-type calcium-binding region2e-0862.8
NC_007494:621673:6224986224986241681671Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequenceHemolysin-type calcium-binding region, RTX2e-0862.8
NC_007946:4779745:4825022482502248280963075Escherichia coli UTI89, complete genomehemolysin A3e-0862.4
NC_017505:1370128:1384585138458513894744890Neisseria meningitidis alpha710 chromosome, complete genomeiron-regulated protein FrpC3e-0862.4
NC_004431:3409389:3418896341889634219703075Escherichia coli CFT073, complete genomeHemolysin A4e-0862
NC_008312:7132163:7137998713799871404992502Trichodesmium erythraeum IMS101, complete genomeAllergen V5/Tpx-1 related4e-0862
NC_017517:1409000:1425203142520314282353033Neisseria meningitidis M01-240355 chromosome, complete genomeIron-regulated protein frpC5e-0861.6
NC_004463:8401060:8420476842047684218731398Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein6e-0861.6
NC_014393:2771774:2784278278427827871662889Clostridium cellulovorans 743B chromosome, complete genomeHemolysin-type calcium-binding region1e-0760.8
NC_014762:1204584:12045841204584121461510032Sulfuricurvum kujiense DSM 16994 chromosome, complete genomeouter membrane adhesin like proteiin1e-0760.5
NC_009784:1591851:1604427160442716077653339Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequencehypothetical protein1e-0760.1
NC_008253:3941938:3993570399357039966443075Escherichia coli 536, complete genomehemolysin A2e-0760.1
NC_008253:4735418:4763630476363047667043075Escherichia coli 536, complete genomehemolysin A2e-0760.1
NC_003919:2233000:2243874224387422456941821Xanthomonas axonopodis pv. citri str. 306, complete genomehemolysin related protein2e-0759.7
NC_008312:5308927:53149095314909534451229604Trichodesmium erythraeum IMS101, complete genomeHemolysin-type calcium-binding region2e-0759.7
NC_010278:1467146:1478069147806914812273159Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,RTX-III toxin determinant A from serotype 82e-0759.7
NC_007645:605500:6166836166836239097227Hahella chejuensis KCTC 2396, complete genomeRTX toxins and related Ca2+-binding protein3e-0759.3
NC_013592:2338403:2341853234185323432891437Dickeya dadantii Ech586, complete genomeSerralysin3e-0759.3
NC_014393:2771774:2795961279596127976401680Clostridium cellulovorans 743B chromosome, complete genomeHemolysin-type calcium-binding region3e-0758.9
NC_009784:1591851:1600648160064816035272880Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequencehypothetical protein3e-0758.9
NC_007645:4032668:4045826404582640521136288Hahella chejuensis KCTC 2396, complete genomeRTX toxins and related Ca2+-binding protein4e-0758.9
NC_016513:2103958:2111701211170121148683168Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completehemolysin A4e-0758.9
NC_007645:2628423:26414702641470265192110452Hahella chejuensis KCTC 2396, complete genomeRTX toxins and related Ca2+-binding protein5e-0758.5
NC_007005:3684099:3697028369702837050978070Pseudomonas syringae pv. syringae B728a, complete genomeHemolysin-type calcium-binding region:Haemolysin-type calcium binding related5e-0758.5
NC_013416:1748848:1757607175760717607743168Aggregatibacter actinomycetemcomitans D11S-1, complete genomehemolysin A4e-0758.5
NC_011757:97281:97281972811043097029Methylobacterium chloromethanicum CM4, complete genomeAnimal heme peroxidase6e-0758.2
NC_014500:2402881:2428663242866324300961434Dickeya dadantii 3937 chromosome, complete genomesecreted protease A6e-0758.2
NC_015138:2270181:2286635228663522909064272Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehemolysin-type calcium-binding domain-containing protein6e-0758.2
NC_020064:2299950:2310579231057923127802202Serratia marcescens FGI94, complete genomehemolysin-type calcium-binding protein9e-0757.8
NC_009952:1680682:1686892168689216884061515Dinoroseobacter shibae DFL 12, complete genomeputative hemolysin precursor8e-0757.8
NC_011757:5102732:5131041513104151380697029Methylobacterium chloromethanicum CM4, complete genomeAnimal heme peroxidase7e-0757.8
NC_012912:2426520:2432905243290524343411437Dickeya zeae Ech1591, complete genomeSerralysin1e-0657.4
NC_009925:4271140:4285499428549942872411743Acaryochloris marina MBIC11017, complete genometype I secretion target repeat protein1e-0657
NC_013512:995251:995251995251100964714397Sulfurospirillum deleyianum DSM 6946, complete genomeHemolysin-type calcium binding domain protein2e-0656.6
NC_013592:2338403:2338403233840323398451443Dickeya dadantii Ech586, complete genomeSerralysin2e-0656.6
NC_013592:2338403:2339996233999623414381443Dickeya dadantii Ech586, complete genomeSerralysin2e-0656.6
NC_013947:656140:6720566720566737741719Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeHemolysin-type calcium-binding region2e-0656.6
NC_009482:822716:8305498305498325492001Synechococcus sp. RCC307 chromosome, complete genomehypothetical protein2e-0656.2
NC_010296:2695186:2699204269920427030733870Microcystis aeruginosa NIES-843, complete genomehypothetical protein2e-0656.2
NC_008820:2268900:2275451227545122787863336Prochlorococcus marinus str. MIT 9303, complete genomehypothetical protein2e-0656.2
NC_020209:5077410:51003835100383511615915777Pseudomonas poae RE*1-1-14, complete genomeouter membrane adhesin-like protein2e-0656.2
NC_012587:1203103:1203103120310312044671365Rhizobium sp. NGR234, complete genomepossible protease3e-0655.8
NC_008209:3313087:3329975332997533310031029Roseobacter denitrificans OCh 114, complete genomecalcium binding hemolysin protein, putative3e-0655.8
NC_014012:1097938:1101693110169311084966804Shewanella violacea DSS12, complete genomeRTX toxin, putative3e-0655.8
NC_008820:2268900:2279612227961222829773366Prochlorococcus marinus str. MIT 9303, complete genomehypothetical protein3e-0655.8
NC_007947:1429165:1432922143292214351562235Methylobacillus flagellatus KT, complete genomeHemolysin-type calcium-binding region4e-0655.5
NC_009620:1531000:1553015155301515541781164Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequenceHemolysin-type calcium-binding protein4e-0655.5
NC_010628:1734000:1739570173957017460406471Nostoc punctiforme PCC 73102, complete genomeputative outer membrane adhesin like proteiin4e-0655.5
NC_015733:1555476:1594803159480315962421440Pseudomonas putida S16 chromosome, complete genomeHemolysin-type calcium-binding protein6e-0655.1
NC_021150:1322000:1341839134183913430921254Azotobacter vinelandii CA6, complete genomeAlginate lyase5e-0655.1
NC_012560:1322000:1341827134182713430801254Azotobacter vinelandii DJ, complete genomeAlginate lyase5e-0655.1
NC_014393:2905248:2911063291106329175066444Clostridium cellulovorans 743B chromosome, complete genomeHemolysin-type calcium-binding region5e-0655.1
NC_007005:98488:1337791337791353261548Pseudomonas syringae pv. syringae B728a, complete genomeHemolysin-type calcium-binding region6e-0654.7
NC_011566:1016858:1026445102644510304614017Shewanella piezotolerans WP3, complete genomeHemolysin-type calcium binding protein6e-0654.7
NC_009784:1591851:1598099159809916006812583Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequencehypothetical protein6e-0654.7
NC_009482:619467:6313516313516323881038Synechococcus sp. RCC307 chromosome, complete genomehypothetical protein7e-0654.7
NC_020064:2299950:2309182230918223105821401Serratia marcescens FGI94, complete genomehemolysin-type calcium-binding protein7e-0654.7
NC_011894:6888562:6927720692772069294171698Methylobacterium nodulans ORS 2060, complete genomeHemolysin-type calcium-binding region8e-0654.3
NC_009714:1367775:1378248137824813849856738Campylobacter hominis ATCC BAA-381, complete genomeIg family protein9e-0654.3