Pre_GI: BLASTP Hits

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Query: NC_009439:794498:798517 Pseudomonas mendocina ymp, complete genome

Start: 798517, End: 799845, Length: 1329

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005773:1135374:1173415117341511748151401Pseudomonas syringae pv. phaseolicola 1448A, complete genomeouter membrane efflux protein2e-99362
NC_015733:1555476:1600792160079216022071416Pseudomonas putida S16 chromosome, complete genomeouter membrane efflux protein5e-93342
NC_002947:1988652:2020045202004520214601416Pseudomonas putida KT2440, complete genomeouter membrane efflux protein6e-93341
NC_011901:491783:5140955140955154171323Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completetype I secretion outer membrane protein, TolC3e-32139
NC_009943:677324:6894536894536908471395Candidatus Desulfococcus oleovorans Hxd3, complete genometype I secretion outer membrane protein, TolC family9e-25115
NC_014394:3036758:3064392306439230657261335Gallionella capsiferriformans ES-2 chromosome, complete genometype I secretion outer membrane protein, TolC family7e-25115
NC_013851:2441407:2443743244374324450861344Allochromatium vinosum DSM 180 chromosome, complete genometype I secretion outer membrane protein, TolC family4e-24112
NC_004578:5623783:5648897564889756503361440Pseudomonas syringae pv. tomato str. DC3000, complete genomeouter membrane efflux protein TolC, putative1e-23111
NC_014311:2781898:2782369278236927837541386Ralstonia solanacearum PSI07 chromosome, complete genometype I secretion outer membrane protein, TolC4e-23109
NC_015563:3203012:3203012320301232044871476Delftia sp. Cs1-4 chromosome, complete genometype I secretion outer membrane protein, TolC family4e-22106
NC_014836:223013:2490232490232503811359Desulfurispirillum indicum S5 chromosome, complete genomeTolC family type I secretion outer membrane protein6e-22105
NC_010682:661272:6850996850996865651467Ralstonia pickettii 12J chromosome 1, complete sequencetype I secretion outer membrane protein, TolC family4e-21102
NC_012912:2426520:2427879242787924292791401Dickeya zeae Ech1591, complete genometype I secretion outer membrane protein, TolC family2e-1997.4
NC_015422:3366500:3371684337168433730301347Alicycliphilus denitrificans K601 chromosome, complete genometype I secretion outer membrane protein, TolC family6e-1995.5
NC_020211:1704500:1734374173437417357531380Serratia marcescens WW4, complete genomeTolC family type I secretion outer membrane protein9e-1891.7
NC_013353:3787991:3788825378882537903061482Escherichia coli O103:H2 str. 12009, complete genometransport channel protein TolC2e-1790.5
AP010958:3787991:3788825378882537903061482Escherichia coli O103:H2 str. 12009 DNA, complete genometransport channel protein TolC2e-1790.5
CP002516:693703:7124107124107138911482Escherichia coli KO11, complete genometype I secretion outer membrane protein, TolC family3e-1789.7
NC_000913:3176000:3176137317613731776181482Escherichia coli K12, complete genomeouter membrane channel precursor protein3e-1789.7
NC_010468:694943:7149747149747164551482Escherichia coli ATCC 8739, complete genometype I secretion outer membrane protein, TolC family3e-1789.7
NC_011750:3683760:3683760368376036852411482Escherichia coli IAI39 chromosome, complete genomeouter membrane channel protein3e-1789.7
NC_010473:3273882:3273882327388232753631482Escherichia coli str. K-12 substr. DH10B, complete genometransport channel3e-1789.7
NC_012759:3063285:3063285306328530647661482Escherichia coli BW2952 chromosome, complete genomeouter membrane channel protein3e-1789.7
NC_012947:708064:7267717267717282521482Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeouter membrane channel protein3e-1789.7
NC_013364:3840000:3840082384008238415631482Escherichia coli O111:H- str. 11128, complete genometransport channel protein TolC3e-1789.7
NC_016822:3485631:3485631348563134871121482Shigella sonnei 53G, complete genomeouter membrane channel protein3e-1789.7
NC_016902:693703:7124107124107138911482Escherichia coli KO11FL chromosome, complete genomeTolC family type I secretion outer membrane protein3e-1789.7
NC_009832:1719149:1749485174948517508641380Serratia proteamaculans 568, complete genometype I secretion outer membrane protein, TolC family9e-1788.6
NC_015567:1660462:1692777169277716941531377Serratia sp. AS9 chromosome, complete genometype I secretion outer membrane protein, TolC family1e-1687.8
NC_015566:1659288:1692765169276516941411377Serratia sp. AS12 chromosome, complete genometype I secretion outer membrane protein, TolC family1e-1687.8
NC_020064:1547524:1575771157577115771471377Serratia marcescens FGI94, complete genometype I secretion outer membrane protein, TolC family2e-1687.8
NC_014394:1554373:1573666157366615750331368Gallionella capsiferriformans ES-2 chromosome, complete genometype I secretion outer membrane protein, TolC family7e-1685.5
NC_016625:944925:9436109436109449321323Burkholderia sp. YI23 chromosome 2, complete sequenceTolC family type I secretion outer membrane protein1e-1481.3
NC_008314:2611873:261187326118732612835963Ralstonia eutropha H16 chromosome 2, complete sequenceouter membrane protein2e-1377.4
NC_005773:951744:9566839566839580891407Pseudomonas syringae pv. phaseolicola 1448A, complete genomeouter membrane efflux protein3e-1376.6
NC_016612:627118:6271186271186285661449Klebsiella oxytoca KCTC 1686 chromosome, complete genomeouter membrane channel protein5e-1375.9
NC_015942:2213710:2237484223748422388211338Acidithiobacillus ferrivorans SS3 chromosome, complete genometype I secretion outer membrane protein, TolC family9e-1272
NC_007512:771975:8013448013448026751332Pelodictyon luteolum DSM 273, complete genomeOuter membrane protein-like5e-1066.2
NC_008391:404388:4082534082534097071455Burkholderia cepacia AMMD chromosome 2, complete sequencetype I secretion outer membrane protein, TolC family6e-1065.9
NC_015856:2146713:2171512217151221728731362Collimonas fungivorans Ter331 chromosome, complete genometype I secretion outer membrane protein, TolC5e-1065.9
NC_017517:1807072:1807072180707218083821311Neisseria meningitidis M01-240355 chromosome, complete genomeputative type I secretion outer membrane protein, TolC family7e-1065.5
NC_017505:1783476:1783476178347617848791404Neisseria meningitidis alpha710 chromosome, complete genomeputative periplasmic type I secretion system protein7e-1065.5
NC_015850:1060000:1079709107970910809921284Acidithiobacillus caldus SM-1 chromosome, complete genometype I secretion outer membrane protein, TolC1e-0964.7
NC_011296:102650:1189331189331202491317Thermodesulfovibrio yellowstonii DSM 11347, complete genomeouter membrane efflux protein2e-0861.2